11 items (Verticillium dahliae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDAG_10349	SMB protein. (220 aa)
	VDAG_09240	Small nuclear ribonucleoprotein Sm D2. (122 aa)
	VDAG_08912	GYF domain-containing protein. (466 aa)
	VDAG_06186	Small nuclear ribonucleoprotein G. (85 aa)
	VDAG_04191	Pre-mRNA-splicing factor brr2. (2213 aa)
	VDAG_03726	Uncharacterized protein. (305 aa)
	VDAG_03032	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. (121 aa)
	VDAG_02007	LSM domain-containing protein. (79 aa)
	VDAG_00969	U5 small nuclear ribonucleoprotein component. (983 aa)
	VDAG_00399	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (94 aa)
	VDAG_10305	Pre-mRNA-splicing factor spp42. (2874 aa)

Your Current Organism:

Verticillium dahliae

NCBI taxonomy Id: 498257
Other names: V. dahliae VdLs.17, Verticillium dahliae VdLs.17

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDAG_00399	VDAG_00969	G2WS66	G2WT46	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	U5 small nuclear ribonucleoprotein component.	0.998
VDAG_00399	VDAG_02007	G2WS66	G2WWM1	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	LSM domain-containing protein.	0.999
VDAG_00399	VDAG_03032	G2WS66	G2X009	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	0.999
VDAG_00399	VDAG_03726	G2WS66	G2X0E7	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Uncharacterized protein.	0.665
VDAG_00399	VDAG_04191	G2WS66	G2X2Z7	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Pre-mRNA-splicing factor brr2.	0.996
VDAG_00399	VDAG_06186	G2WS66	G2X8P5	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Small nuclear ribonucleoprotein G.	0.999
VDAG_00399	VDAG_08912	G2WS66	G2XGC5	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	GYF domain-containing protein.	0.695
VDAG_00399	VDAG_09240	G2WS66	G2XGF8	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Small nuclear ribonucleoprotein Sm D2.	0.999
VDAG_00399	VDAG_10305	G2WS66	G2XJP2	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Pre-mRNA-splicing factor spp42.	0.997
VDAG_00399	VDAG_10349	G2WS66	G2XJE8	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	SMB protein.	0.999
VDAG_00969	VDAG_00399	G2WT46	G2WS66	U5 small nuclear ribonucleoprotein component.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.998
VDAG_00969	VDAG_02007	G2WT46	G2WWM1	U5 small nuclear ribonucleoprotein component.	LSM domain-containing protein.	0.997
VDAG_00969	VDAG_03032	G2WT46	G2X009	U5 small nuclear ribonucleoprotein component.	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	0.998
VDAG_00969	VDAG_03726	G2WT46	G2X0E7	U5 small nuclear ribonucleoprotein component.	Uncharacterized protein.	0.794
VDAG_00969	VDAG_04191	G2WT46	G2X2Z7	U5 small nuclear ribonucleoprotein component.	Pre-mRNA-splicing factor brr2.	0.999
VDAG_00969	VDAG_06186	G2WT46	G2X8P5	U5 small nuclear ribonucleoprotein component.	Small nuclear ribonucleoprotein G.	0.996
VDAG_00969	VDAG_08912	G2WT46	G2XGC5	U5 small nuclear ribonucleoprotein component.	GYF domain-containing protein.	0.845
VDAG_00969	VDAG_09240	G2WT46	G2XGF8	U5 small nuclear ribonucleoprotein component.	Small nuclear ribonucleoprotein Sm D2.	0.996
VDAG_00969	VDAG_10305	G2WT46	G2XJP2	U5 small nuclear ribonucleoprotein component.	Pre-mRNA-splicing factor spp42.	0.999
VDAG_00969	VDAG_10349	G2WT46	G2XJE8	U5 small nuclear ribonucleoprotein component.	SMB protein.	0.996