STRINGSTRING
VDAG_09240 VDAG_09240 VDAG_08873 VDAG_08873 VDAG_08777 VDAG_08777 VDAG_08765 VDAG_08765 VDAG_08679 VDAG_08679 VDAG_08683 VDAG_08683 VDAG_00760 VDAG_00760 VDAG_00399 VDAG_00399 VDAG_02007 VDAG_02007 VDAG_06186 VDAG_06186 VDAG_03123 VDAG_03123 VDAG_03032 VDAG_03032 VDAG_05301 VDAG_05301 VDAG_05311 VDAG_05311 VDAG_05893 VDAG_05893 VDAG_10424 VDAG_10424 VDAG_10349 VDAG_10349
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
VDAG_09240Small nuclear ribonucleoprotein Sm D2. (122 aa)
VDAG_08873IDC1 protein. (1580 aa)
VDAG_08777Pre-mRNA-processing protein prp40. (839 aa)
VDAG_08765Uncharacterized protein. (148 aa)
VDAG_08679U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (179 aa)
VDAG_08683GTP-binding protein EsdC. (326 aa)
VDAG_00760PWI domain-containing protein. (687 aa)
VDAG_00399Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (94 aa)
VDAG_02007LSM domain-containing protein. (79 aa)
VDAG_06186Small nuclear ribonucleoprotein G. (85 aa)
VDAG_03123Pre-mRNA-processing factor 39. (576 aa)
VDAG_03032Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. (121 aa)
VDAG_05301LUC7 protein. (271 aa)
VDAG_05311FF domain-containing protein. (583 aa)
VDAG_05893U1 small nuclear ribonucleoprotein. (416 aa)
VDAG_10424U1 small nuclear ribonucleoprotein A. (246 aa)
VDAG_10349SMB protein. (220 aa)
Your Current Organism:
Verticillium dahliae
NCBI taxonomy Id: 498257
Other names: V. dahliae VdLs.17, Verticillium dahliae VdLs.17
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.