19 items (Verticillium dahliae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDAG_06567	Pre-mRNA-splicing factor ini1. (110 aa)
	VDAG_02007	LSM domain-containing protein. (79 aa)
	VDAG_02758	RNA-binding motif protein. (333 aa)
	VDAG_02556	Splicing factor subunit; Belongs to the SF3B5 family. (117 aa)
	VDAG_03509	Splicing factor 3A subunit 2. (241 aa)
	VDAG_03069	Pre-mRNA branch site protein p14. (117 aa)
	VDAG_04264	U2 snRNP component prp10. (1223 aa)
	VDAG_04370	RRM domain-containing protein. (440 aa)
	VDAG_05715	Uncharacterized protein. (234 aa)
	VDAG_05945	Cell cycle control protein cwf14. (148 aa)
	VDAG_10349	SMB protein. (220 aa)
	VDAG_06186	Small nuclear ribonucleoprotein G. (85 aa)
	VDAG_08454	Splicing factor 3B subunit 4. (498 aa)
	VDAG_09240	Small nuclear ribonucleoprotein Sm D2. (122 aa)
	VDAG_10009	Splicing factor 3B subunit 2. (534 aa)
	VDAG_10316	Pre-mRNA-splicing factor sap114. (518 aa)
	VDAG_00538	U2 small nuclear ribonucleoprotein A. (264 aa)
	VDAG_00399	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (94 aa)
	VDAG_01609	CID domain-containing protein. (820 aa)

Your Current Organism:

Verticillium dahliae

NCBI taxonomy Id: 498257
Other names: V. dahliae VdLs.17, Verticillium dahliae VdLs.17

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDAG_00399	VDAG_00538	G2WS66	G2WQ96	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	U2 small nuclear ribonucleoprotein A.	0.999
VDAG_00399	VDAG_01609	G2WS66	G2WSL3	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	CID domain-containing protein.	0.701
VDAG_00399	VDAG_02007	G2WS66	G2WWM1	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	LSM domain-containing protein.	0.999
VDAG_00399	VDAG_02556	G2WS66	G2WY74	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Splicing factor subunit; Belongs to the SF3B5 family.	0.990
VDAG_00399	VDAG_02758	G2WS66	G2WWX9	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	RNA-binding motif protein.	0.844
VDAG_00399	VDAG_03069	G2WS66	G2X046	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Pre-mRNA branch site protein p14.	0.980
VDAG_00399	VDAG_03509	G2WS66	G2WZR7	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Splicing factor 3A subunit 2.	0.983
VDAG_00399	VDAG_04264	G2WS66	G2X1U0	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	U2 snRNP component prp10.	0.988
VDAG_00399	VDAG_04370	G2WS66	G2X246	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	RRM domain-containing protein.	0.636
VDAG_00399	VDAG_05715	G2WS66	G2X6D3	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Uncharacterized protein.	0.878
VDAG_00399	VDAG_05945	G2WS66	G2X713	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Cell cycle control protein cwf14.	0.994
VDAG_00399	VDAG_06186	G2WS66	G2X8P5	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Small nuclear ribonucleoprotein G.	0.999
VDAG_00399	VDAG_06567	G2WS66	G2X7V9	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Pre-mRNA-splicing factor ini1.	0.994
VDAG_00399	VDAG_08454	G2WS66	G2XE72	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Splicing factor 3B subunit 4.	0.963
VDAG_00399	VDAG_09240	G2WS66	G2XGF8	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Small nuclear ribonucleoprotein Sm D2.	0.999
VDAG_00399	VDAG_10009	G2WS66	G2XIM7	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Splicing factor 3B subunit 2.	0.987
VDAG_00399	VDAG_10316	G2WS66	G2XJI4	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Pre-mRNA-splicing factor sap114.	0.982
VDAG_00399	VDAG_10349	G2WS66	G2XJE8	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	SMB protein.	0.999
VDAG_00538	VDAG_00399	G2WQ96	G2WS66	U2 small nuclear ribonucleoprotein A.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.999
VDAG_00538	VDAG_01609	G2WQ96	G2WSL3	U2 small nuclear ribonucleoprotein A.	CID domain-containing protein.	0.951