6 items (Verticillium dahliae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDAG_10349	SMB protein. (220 aa)
	VDAG_02007	LSM domain-containing protein. (79 aa)
	VDAG_03032	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. (121 aa)
	VDAG_00399	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (94 aa)
	VDAG_06186	Small nuclear ribonucleoprotein G. (85 aa)
	VDAG_08829	Pre-mRNA-processing factor 31. (596 aa)

Your Current Organism:

Verticillium dahliae

NCBI taxonomy Id: 498257
Other names: V. dahliae VdLs.17, Verticillium dahliae VdLs.17

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDAG_00399	VDAG_02007	G2WS66	G2WWM1	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	LSM domain-containing protein.	0.999
VDAG_00399	VDAG_03032	G2WS66	G2X009	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	0.999
VDAG_00399	VDAG_06186	G2WS66	G2X8P5	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Small nuclear ribonucleoprotein G.	0.999
VDAG_00399	VDAG_08829	G2WS66	G2XF97	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Pre-mRNA-processing factor 31.	0.980
VDAG_00399	VDAG_10349	G2WS66	G2XJE8	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	SMB protein.	0.999
VDAG_02007	VDAG_00399	G2WWM1	G2WS66	LSM domain-containing protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.999
VDAG_02007	VDAG_03032	G2WWM1	G2X009	LSM domain-containing protein.	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	0.999
VDAG_02007	VDAG_06186	G2WWM1	G2X8P5	LSM domain-containing protein.	Small nuclear ribonucleoprotein G.	0.999
VDAG_02007	VDAG_08829	G2WWM1	G2XF97	LSM domain-containing protein.	Pre-mRNA-processing factor 31.	0.986
VDAG_02007	VDAG_10349	G2WWM1	G2XJE8	LSM domain-containing protein.	SMB protein.	0.999
VDAG_03032	VDAG_00399	G2X009	G2WS66	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.999
VDAG_03032	VDAG_02007	G2X009	G2WWM1	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	LSM domain-containing protein.	0.999
VDAG_03032	VDAG_06186	G2X009	G2X8P5	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	Small nuclear ribonucleoprotein G.	0.999
VDAG_03032	VDAG_08829	G2X009	G2XF97	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	Pre-mRNA-processing factor 31.	0.967
VDAG_03032	VDAG_10349	G2X009	G2XJE8	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	SMB protein.	0.999
VDAG_06186	VDAG_00399	G2X8P5	G2WS66	Small nuclear ribonucleoprotein G.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.999
VDAG_06186	VDAG_02007	G2X8P5	G2WWM1	Small nuclear ribonucleoprotein G.	LSM domain-containing protein.	0.999
VDAG_06186	VDAG_03032	G2X8P5	G2X009	Small nuclear ribonucleoprotein G.	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	0.999
VDAG_06186	VDAG_08829	G2X8P5	G2XF97	Small nuclear ribonucleoprotein G.	Pre-mRNA-processing factor 31.	0.981
VDAG_06186	VDAG_10349	G2X8P5	G2XJE8	Small nuclear ribonucleoprotein G.	SMB protein.	0.999