19 items (Verticillium dahliae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDAG_00613	THO complex subunit 2. (2374 aa)
	VDAG_00682	Cell division control protein. (411 aa)
	VDAG_01386	CTD kinase subunit alpha. (791 aa)
	VDAG_01824	RNA polymerase-associated protein RTF1. (610 aa)
	VDAG_03282	Uncharacterized protein. (387 aa)
	VDAG_03481	Zn(II)2Cys6 cluster transcripitional activator. (720 aa)
	VDAG_03517	Chromatin structure-remodeling complex protein RSC7. (528 aa)
	VDAG_03014	Transcription initiation factor iif. (368 aa)
	VDAG_03015	Uncharacterized protein. (297 aa)
	VDAG_03035	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1231 aa)
	VDAG_03766	Histone chaperone. (459 aa)
	VDAG_06451	DNA-directed RNA polymerases I. (149 aa)
	VDAG_06655	THO complex subunit 1. (858 aa)
	VDAG_07469	Uncharacterized protein. (561 aa)
	VDAG_08296	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family. (119 aa)
	VDAG_08694	Uncharacterized protein. (410 aa)
	VDAG_08700	Uncharacterized protein. (357 aa)
	VDAG_09021	COP9 signalosome complex subunit 12. (471 aa)
	VDAG_10223	Uncharacterized protein. (491 aa)

Your Current Organism:

Verticillium dahliae

NCBI taxonomy Id: 498257
Other names: V. dahliae VdLs.17, Verticillium dahliae VdLs.17

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDAG_00613	VDAG_06655	G2WQH1	G2X923	THO complex subunit 2.	THO complex subunit 1.	0.999
VDAG_00613	VDAG_08700	G2WQH1	G2XEW8	THO complex subunit 2.	Uncharacterized protein.	0.997
VDAG_00682	VDAG_01386	G2WQP0	G2WUB3	Cell division control protein.	CTD kinase subunit alpha.	0.525
VDAG_00682	VDAG_01824	G2WQP0	G2WW38	Cell division control protein.	RNA polymerase-associated protein RTF1.	0.996
VDAG_00682	VDAG_03015	G2WQP0	G2WZZ2	Cell division control protein.	Uncharacterized protein.	0.781
VDAG_00682	VDAG_03035	G2WQP0	G2X012	Cell division control protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.723
VDAG_00682	VDAG_06451	G2WQP0	G2X7J3	Cell division control protein.	DNA-directed RNA polymerases I.	0.874
VDAG_00682	VDAG_07469	G2WQP0	G2XB39	Cell division control protein.	Uncharacterized protein.	0.959
VDAG_00682	VDAG_08296	G2WQP0	G2XDR4	Cell division control protein.	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.	0.822
VDAG_00682	VDAG_08694	G2WQP0	G2XEW2	Cell division control protein.	Uncharacterized protein.	0.999
VDAG_00682	VDAG_10223	G2WQP0	G2XJ91	Cell division control protein.	Uncharacterized protein.	0.999
VDAG_01386	VDAG_00682	G2WUB3	G2WQP0	CTD kinase subunit alpha.	Cell division control protein.	0.525
VDAG_01386	VDAG_03015	G2WUB3	G2WZZ2	CTD kinase subunit alpha.	Uncharacterized protein.	0.603
VDAG_01386	VDAG_03035	G2WUB3	G2X012	CTD kinase subunit alpha.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.437
VDAG_01386	VDAG_06451	G2WUB3	G2X7J3	CTD kinase subunit alpha.	DNA-directed RNA polymerases I.	0.618
VDAG_01386	VDAG_08694	G2WUB3	G2XEW2	CTD kinase subunit alpha.	Uncharacterized protein.	0.468
VDAG_01824	VDAG_00682	G2WW38	G2WQP0	RNA polymerase-associated protein RTF1.	Cell division control protein.	0.996
VDAG_01824	VDAG_03035	G2WW38	G2X012	RNA polymerase-associated protein RTF1.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.689
VDAG_01824	VDAG_06451	G2WW38	G2X7J3	RNA polymerase-associated protein RTF1.	DNA-directed RNA polymerases I.	0.844
VDAG_01824	VDAG_07469	G2WW38	G2XB39	RNA polymerase-associated protein RTF1.	Uncharacterized protein.	0.924