21 items (Verticillium dahliae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDAG_05947	DNA-directed RNA polymerases I and III subunit RPAC2. (146 aa)
	VDAG_04242	DNA-directed RNA polymerases I and III subunit RPAC1. (375 aa)
	VDAG_03035	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1231 aa)
	VDAG_10033	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1702 aa)
	VDAG_10019	RNA polymerase II transcription factor B subunit 1. (547 aa)
	VDAG_09923	Uncharacterized protein. (1110 aa)
	VDAG_09922	Myb domain-containing protein. (600 aa)
	VDAG_07801	Metallothionein-I transcription activator. (81 aa)
	VDAG_07450	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (340 aa)
	VDAG_03020	RNA polymerase I-specific transcription initiation factor rrn3. (693 aa)
	VDAG_06451	DNA-directed RNA polymerases I. (149 aa)
	VDAG_02595	DNA-dependent RNA polymerase I subunit A43. (486 aa)
	VDAG_02976	SWIB domain-containing protein. (268 aa)
	VDAG_00994	DNA-directed RNA polymerases I/II/III subunit 10. (76 aa)
	VDAG_00414	Uncharacterized protein. (456 aa)
	VDAG_00359	Uncharacterized protein. (569 aa)
	VDAG_00162	Membrane protein. (240 aa)
	VDAG_00696	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (122 aa)
	VDAG_00690	DNA-directed RNA polymerases I. (231 aa)
	VDAG_06559	TATA-binding protein-associated factor MOT1. (1860 aa)
	VDAG_10430	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (152 aa)

Your Current Organism:

Verticillium dahliae

NCBI taxonomy Id: 498257
Other names: V. dahliae VdLs.17, Verticillium dahliae VdLs.17

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDAG_00162	VDAG_00359	G2WRH9	G2WS26	Membrane protein.	Uncharacterized protein.	0.625
VDAG_00162	VDAG_02976	G2WRH9	G2WXJ7	Membrane protein.	SWIB domain-containing protein.	0.482
VDAG_00359	VDAG_00162	G2WS26	G2WRH9	Uncharacterized protein.	Membrane protein.	0.625
VDAG_00359	VDAG_02976	G2WS26	G2WXJ7	Uncharacterized protein.	SWIB domain-containing protein.	0.447
VDAG_00414	VDAG_00690	G2WS81	G2WQP8	Uncharacterized protein.	DNA-directed RNA polymerases I.	0.559
VDAG_00414	VDAG_00696	G2WS81	G2WQQ4	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.663
VDAG_00414	VDAG_00994	G2WS81	G2WT71	Uncharacterized protein.	DNA-directed RNA polymerases I/II/III subunit 10.	0.628
VDAG_00414	VDAG_02595	G2WS81	G2WYB3	Uncharacterized protein.	DNA-dependent RNA polymerase I subunit A43.	0.578
VDAG_00414	VDAG_02976	G2WS81	G2WXJ7	Uncharacterized protein.	SWIB domain-containing protein.	0.508
VDAG_00414	VDAG_03020	G2WS81	G2WZZ7	Uncharacterized protein.	RNA polymerase I-specific transcription initiation factor rrn3.	0.812
VDAG_00414	VDAG_03035	G2WS81	G2X012	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.716
VDAG_00414	VDAG_04242	G2WS81	G2X1R8	Uncharacterized protein.	DNA-directed RNA polymerases I and III subunit RPAC1.	0.545
VDAG_00414	VDAG_05947	G2WS81	G2X715	Uncharacterized protein.	DNA-directed RNA polymerases I and III subunit RPAC2.	0.660
VDAG_00414	VDAG_06451	G2WS81	G2X7J3	Uncharacterized protein.	DNA-directed RNA polymerases I.	0.506
VDAG_00414	VDAG_07801	G2WS81	G2XCB9	Uncharacterized protein.	Metallothionein-I transcription activator.	0.562
VDAG_00414	VDAG_10033	G2WS81	G2XIQ1	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.723
VDAG_00414	VDAG_10430	G2WS81	G2XJU8	Uncharacterized protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.509
VDAG_00690	VDAG_00414	G2WQP8	G2WS81	DNA-directed RNA polymerases I.	Uncharacterized protein.	0.559
VDAG_00690	VDAG_00696	G2WQP8	G2WQQ4	DNA-directed RNA polymerases I.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.997
VDAG_00690	VDAG_00994	G2WQP8	G2WT71	DNA-directed RNA polymerases I.	DNA-directed RNA polymerases I/II/III subunit 10.	0.999