9 items (Verticillium dahliae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDAG_01960	KH domain-containing protein. (524 aa)
	VDAG_10305	Pre-mRNA-splicing factor spp42. (2874 aa)
	VDAG_08873	IDC1 protein. (1580 aa)
	VDAG_08765	Uncharacterized protein. (148 aa)
	VDAG_08679	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (179 aa)
	VDAG_05301	LUC7 protein. (271 aa)
	VDAG_03123	Pre-mRNA-processing factor 39. (576 aa)
	VDAG_00760	PWI domain-containing protein. (687 aa)
	VDAG_01132	Pre-mRNA-processing factor 17. (531 aa)

Your Current Organism:

Verticillium dahliae

NCBI taxonomy Id: 498257
Other names: V. dahliae VdLs.17, Verticillium dahliae VdLs.17

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDAG_00760	VDAG_01132	G2WQW8	G2WTK9	PWI domain-containing protein.	Pre-mRNA-processing factor 17.	0.608
VDAG_00760	VDAG_03123	G2WQW8	G2WYN1	PWI domain-containing protein.	Pre-mRNA-processing factor 39.	0.933
VDAG_00760	VDAG_05301	G2WQW8	G2X5Y5	PWI domain-containing protein.	LUC7 protein.	0.996
VDAG_00760	VDAG_08679	G2WQW8	G2XEU4	PWI domain-containing protein.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	0.995
VDAG_00760	VDAG_08765	G2WQW8	G2XF33	PWI domain-containing protein.	Uncharacterized protein.	0.499
VDAG_00760	VDAG_08873	G2WQW8	G2XG86	PWI domain-containing protein.	IDC1 protein.	0.739
VDAG_01132	VDAG_00760	G2WTK9	G2WQW8	Pre-mRNA-processing factor 17.	PWI domain-containing protein.	0.608
VDAG_01132	VDAG_10305	G2WTK9	G2XJP2	Pre-mRNA-processing factor 17.	Pre-mRNA-splicing factor spp42.	0.992
VDAG_01960	VDAG_05301	G2WWH4	G2X5Y5	KH domain-containing protein.	LUC7 protein.	0.532
VDAG_03123	VDAG_00760	G2WYN1	G2WQW8	Pre-mRNA-processing factor 39.	PWI domain-containing protein.	0.933
VDAG_03123	VDAG_05301	G2WYN1	G2X5Y5	Pre-mRNA-processing factor 39.	LUC7 protein.	0.962
VDAG_03123	VDAG_08679	G2WYN1	G2XEU4	Pre-mRNA-processing factor 39.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	0.975
VDAG_03123	VDAG_08873	G2WYN1	G2XG86	Pre-mRNA-processing factor 39.	IDC1 protein.	0.624
VDAG_05301	VDAG_00760	G2X5Y5	G2WQW8	LUC7 protein.	PWI domain-containing protein.	0.996
VDAG_05301	VDAG_01960	G2X5Y5	G2WWH4	LUC7 protein.	KH domain-containing protein.	0.532
VDAG_05301	VDAG_03123	G2X5Y5	G2WYN1	LUC7 protein.	Pre-mRNA-processing factor 39.	0.962
VDAG_05301	VDAG_08679	G2X5Y5	G2XEU4	LUC7 protein.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	0.976
VDAG_05301	VDAG_08765	G2X5Y5	G2XF33	LUC7 protein.	Uncharacterized protein.	0.624
VDAG_08679	VDAG_00760	G2XEU4	G2WQW8	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	PWI domain-containing protein.	0.995
VDAG_08679	VDAG_03123	G2XEU4	G2WYN1	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	Pre-mRNA-processing factor 39.	0.975