11 items (Verticillium dahliae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDAG_03300	DUF3453 domain-containing protein. (719 aa)
	VDAG_06137	Cft-1. (1445 aa)
	VDAG_05766	Cleavage and polyadenylation specificity factor subunit 5. (268 aa)
	VDAG_06621	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (604 aa)
	VDAG_06770	CID domain-containing protein. (499 aa)
	VDAG_09052	Uncharacterized protein. (187 aa)
	VDAG_00026	MPE1 protein. (634 aa)
	VDAG_09053	Uncharacterized protein. (239 aa)
	VDAG_09937	Cleavage and polyadenylation specificity factor subunit 2. (972 aa)
	VDAG_04254	RNA-binding protein. (306 aa)
	VDAG_00125	Nuclear polyadenylated RNA-binding protein. (484 aa)

Your Current Organism:

Verticillium dahliae

NCBI taxonomy Id: 498257
Other names: V. dahliae VdLs.17, Verticillium dahliae VdLs.17

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDAG_00026	VDAG_03300	G2WR43	G2WZ58	MPE1 protein.	DUF3453 domain-containing protein.	0.977
VDAG_00026	VDAG_04254	G2WR43	G2X1T0	MPE1 protein.	RNA-binding protein.	0.916
VDAG_00026	VDAG_06137	G2WR43	G2X8J6	MPE1 protein.	Cft-1.	0.998
VDAG_00026	VDAG_06621	G2WR43	G2X8Y9	MPE1 protein.	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	0.766
VDAG_00026	VDAG_06770	G2WR43	G2X9D8	MPE1 protein.	CID domain-containing protein.	0.873
VDAG_00026	VDAG_09052	G2WR43	G2XG73	MPE1 protein.	Uncharacterized protein.	0.766
VDAG_00026	VDAG_09053	G2WR43	G2XG74	MPE1 protein.	Uncharacterized protein.	0.766
VDAG_00026	VDAG_09937	G2WR43	G2XIF5	MPE1 protein.	Cleavage and polyadenylation specificity factor subunit 2.	0.997
VDAG_00125	VDAG_04254	G2WRE2	G2X1T0	Nuclear polyadenylated RNA-binding protein.	RNA-binding protein.	0.933
VDAG_00125	VDAG_06137	G2WRE2	G2X8J6	Nuclear polyadenylated RNA-binding protein.	Cft-1.	0.515
VDAG_00125	VDAG_06770	G2WRE2	G2X9D8	Nuclear polyadenylated RNA-binding protein.	CID domain-containing protein.	0.543
VDAG_03300	VDAG_00026	G2WZ58	G2WR43	DUF3453 domain-containing protein.	MPE1 protein.	0.977
VDAG_03300	VDAG_04254	G2WZ58	G2X1T0	DUF3453 domain-containing protein.	RNA-binding protein.	0.992
VDAG_03300	VDAG_05766	G2WZ58	G2X6I4	DUF3453 domain-containing protein.	Cleavage and polyadenylation specificity factor subunit 5.	0.847
VDAG_03300	VDAG_06137	G2WZ58	G2X8J6	DUF3453 domain-containing protein.	Cft-1.	0.999
VDAG_03300	VDAG_06621	G2WZ58	G2X8Y9	DUF3453 domain-containing protein.	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	0.901
VDAG_03300	VDAG_06770	G2WZ58	G2X9D8	DUF3453 domain-containing protein.	CID domain-containing protein.	0.992
VDAG_03300	VDAG_09052	G2WZ58	G2XG73	DUF3453 domain-containing protein.	Uncharacterized protein.	0.901
VDAG_03300	VDAG_09053	G2WZ58	G2XG74	DUF3453 domain-containing protein.	Uncharacterized protein.	0.901
VDAG_03300	VDAG_09937	G2WZ58	G2XIF5	DUF3453 domain-containing protein.	Cleavage and polyadenylation specificity factor subunit 2.	0.999