STRINGSTRING
VDAG_06114 VDAG_06114 VDAG_06687 VDAG_06687 VDAG_06842 VDAG_06842 VDAG_06875 VDAG_06875 VDAG_07004 VDAG_07004 VDAG_07068 VDAG_07068 VDAG_07095 VDAG_07095 VDAG_07377 VDAG_07377 VDAG_07469 VDAG_07469 VDAG_03014 VDAG_03014 VDAG_03750 VDAG_03750 VDAG_03923 VDAG_03923 VDAG_04383 VDAG_04383 VDAG_04392 VDAG_04392 VDAG_04409 VDAG_04409 VDAG_04574 VDAG_04574 VDAG_04586 VDAG_04586 VDAG_04649 VDAG_04649 VDAG_05018 VDAG_05018 VDAG_05625 VDAG_05625 VDAG_05954 VDAG_05954 VDAG_07486 VDAG_07486 VDAG_07504 VDAG_07504 VDAG_07801 VDAG_07801 VDAG_08425 VDAG_08425 VDAG_08575 VDAG_08575 VDAG_08694 VDAG_08694 VDAG_08811 VDAG_08811 VDAG_01824 VDAG_01824 VDAG_01224 VDAG_01224 VDAG_01058 VDAG_01058 VDAG_00994 VDAG_00994 VDAG_00940 VDAG_00940 VDAG_09315 VDAG_09315 VDAG_10019 VDAG_10019 VDAG_10031 VDAG_10031 VDAG_10130 VDAG_10130 VDAG_10182 VDAG_10182 VDAG_10223 VDAG_10223 VDAG_10430 VDAG_10430 VDAG_10455 VDAG_10455 VDAG_00839 VDAG_00839 VDAG_01571 VDAG_01571 VDAG_00385 VDAG_00385 VDAG_00690 VDAG_00690 VDAG_00682 VDAG_00682 VDAG_06451 VDAG_06451 VDAG_06076 VDAG_06076
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
VDAG_06114DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1755 aa)
VDAG_06687Bromodomain associated domain-containing protein. (316 aa)
VDAG_06842RNA polymerase II transcription factor B subunit 3. (353 aa)
VDAG_06875Transcription initiation factor TFIID subunit 9. (312 aa)
VDAG_07004Uncharacterized protein. (167 aa)
VDAG_07068DNA-directed RNA polymerase II subunit RPB3. (342 aa)
VDAG_07095Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...] (224 aa)
VDAG_07377RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (476 aa)
VDAG_07469Uncharacterized protein. (561 aa)
VDAG_03014Transcription initiation factor iif. (368 aa)
VDAG_03750DNA repair helicase RAD25. (792 aa)
VDAG_03923General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (461 aa)
VDAG_04383Transcription initiation factor TFIID subunit 7. (506 aa)
VDAG_04392DNA-directed RNA polymerase II subunit RPB7. (171 aa)
VDAG_04409Bromodomain associated domain-containing protein. (283 aa)
VDAG_04574Transcription initiation factor IIE subunit alpha. (411 aa)
VDAG_04586DUF618 domain-containing protein. (409 aa)
VDAG_04649Transcription initiation factor TFIID subunit 5. (759 aa)
VDAG_05018TAFII28 domain-containing protein. (327 aa)
VDAG_05625DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1260 aa)
VDAG_05954Tetratricopeptide repeat protein. (1150 aa)
VDAG_07486Meiotic recombination protein rec14. (336 aa)
VDAG_07504RNA polymerase II transcription factor B subunit 4. (398 aa)
VDAG_07801Metallothionein-I transcription activator. (81 aa)
VDAG_08425DNA-directed RNA polymerase II. (151 aa)
VDAG_08575Acyl_transf_3 domain-containing protein. (517 aa)
VDAG_08694Uncharacterized protein. (410 aa)
VDAG_08811RPOL4c domain-containing protein. (160 aa)
VDAG_01824RNA polymerase-associated protein RTF1. (610 aa)
VDAG_01224Uncharacterized protein. (356 aa)
VDAG_01058Transcription initiation factor TFIID 127kD subunit. (1533 aa)
VDAG_00994DNA-directed RNA polymerases I/II/III subunit 10. (76 aa)
VDAG_00940Transcription initiation factor TFIID subunit 1. (1158 aa)
VDAG_09315Transcription initiation factor TFIID subunit 6. (394 aa)
VDAG_10019RNA polymerase II transcription factor B subunit 1. (547 aa)
VDAG_10031DNA repair helicase RAD3. (772 aa)
VDAG_10130Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (722 aa)
VDAG_10182Uncharacterized protein. (275 aa)
VDAG_10223Uncharacterized protein. (491 aa)
VDAG_10430DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (152 aa)
VDAG_10455Cyclin mcs2. (359 aa)
VDAG_00839Transcription initiation factor TFIID subunit 12. (751 aa)
VDAG_01571Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (277 aa)
VDAG_00385Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (115 aa)
VDAG_00690DNA-directed RNA polymerases I. (231 aa)
VDAG_00682Cell division control protein. (411 aa)
VDAG_06451DNA-directed RNA polymerases I. (149 aa)
VDAG_06076Uncharacterized protein. (412 aa)
Your Current Organism:
Verticillium dahliae
NCBI taxonomy Id: 498257
Other names: V. dahliae VdLs.17, Verticillium dahliae VdLs.17
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