(61 nodes) Ligase activity, forming carbon-nitrogen bonds network (Verticillium dahliae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AIM41	Altered inheritance of mitochondria protein 41. (200 aa)
	VDAG_09354	Adenosylmethionine-8-amino-7-oxononanoate aminotransferase. (807 aa)
	VDAG_09877	Glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in the mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). Belongs to the GatB/GatE family. GatB subfamily. (622 aa)
	VDAG_10040	TTL domain-containing protein. (718 aa)
	VDAG_10070	Uncharacterized protein. (372 aa)
	VDAG_10185	Pantothenate synthetase. (372 aa)
	VDAG_10191	Uncharacterized protein. (292 aa)
	VDAG_10366	TTL domain-containing protein. (355 aa)
	VDAG_06886	Folylpolyglutamate synthase. (499 aa)
	VDAG_06053	Nicotinate phosphoribosyltransferase; Catalyzes the synthesis of beta-nicotinate D-ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP; Belongs to the NAPRTase family. (460 aa)
	VDAG_00348	Carbamoyl-phosphate synthase arginine-specific small chain. (450 aa)
	VDAG_06304	Phosphoribosylamine-glycine ligase. (798 aa)
	VDAG_05884	Glutamine synthetase. (359 aa)
	VDAG_05314	N-(5-amino-5-carboxypentanoyl)-L-cysteinyl-D-valine synthase. (4757 aa)
	VDAG_00477	PyrABCN. (2214 aa)
	VDAG_00715	Methyltransferase. (424 aa)
	VDAG_00089	Glutamine synthetase. (357 aa)
	VDAG_00135	Glutamate-cysteine ligase. (725 aa)
	VDAG_00153	Uncharacterized protein. (341 aa)
	VDAG_00241	Folylpolyglutamate synthase. (436 aa)
	VDAG_00271	Asparagine synthetase. (474 aa)
	VDAG_06340	Glutathione synthetase. (424 aa)
	VDAG_00400	5-formyltetrahydrofolate cyclo-ligase. (252 aa)
	VDAG_05224	Uncharacterized protein. (123 aa)
	VDAG_04696	SAM binding motif containing protein. (736 aa)
	VDAG_04921	Uncharacterized protein. (461 aa)
	VDAG_04184	Carbamoyl-phosphate synthase arginine-specific large chain. (51 aa)
	VDAG_04183	Carbamoyl-phosphate synthase arginine-specific large chain. (898 aa)
	VDAG_04369	Uncharacterized protein. (263 aa)
	VDAG_04280	Adenylosuccinate synthetase; Plays an important role in the de novo pathway and in the salvage pathway of purine nucleotide biosynthesis. Catalyzes the first commited step in the biosynthesis of AMP from IMP. (411 aa)
	VDAG_04223	Diphthami_syn_2 domain-containing protein. (774 aa)
	VDAG_03674	Acetyl-CoA carboxylase. (2281 aa)
	VDAG_03033	Glutamine-dependent NAD(+) synthetase; In the C-terminal section; belongs to the NAD synthetase family. (651 aa)
	VDAG_03525	Cytoplasm protein. (561 aa)
	VDAG_02690	Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in the mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). Belongs to the amidase family. GatA subfamily. (509 aa)
	VDAG_02372	Uncharacterized protein. (404 aa)
	VDAG_02765	Methyltransferase. (342 aa)
	VDAG_01812	Uncharacterized protein. (135 aa)
	VDAG_01811	Phosphopantothenate-cysteine ligase. (214 aa)
	VDAG_01708	Phosphoribosylaminoimidazole-succinocarboxamide synthase. (315 aa)
	VDAG_01520	C-1-tetrahydrofolate synthase. (921 aa)
	VDAG_01243	tRNA(Ile)-lysidine synthase. (355 aa)
	VDAG_00406	Uncharacterized protein. (286 aa)
	VDAG_10380	Uncharacterized protein. (472 aa)
	VDAG_10345	UMTA protein. (345 aa)
	VDAG_10449	Argininosuccinate synthase. (419 aa)
	VDAG_10534	CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. (590 aa)
	VDAG_06924	Urea amidolyase. (1816 aa)
	VDAG_06887	Folylpolyglutamate synthase; Catalyzes conversion of folates to polyglutamate derivatives allowing concentration of folate compounds in the cell and the intracellular retention of these cofactors, which are important substrates for most of the folate-dependent enzymes that are involved in one-carbon transfer reactions involved in purine, pyrimidine and amino acid synthesis; Belongs to the folylpolyglutamate synthase family. (488 aa)
	VDAG_07094	Uncharacterized protein. (357 aa)
	VDAG_07409	Uncharacterized protein. (367 aa)
	VDAG_07355	Biotin-protein ligase ligase. (676 aa)
	VDAG_07271	TTL domain-containing protein. (472 aa)
	VDAG_07696	Lipoate-protein ligase A. (418 aa)
	VDAG_08092	Uncharacterized protein. (351 aa)
	VDAG_08345	Phosphoribosylamine-glycine ligase. (261 aa)
	VDAG_08407	Phosphoribosylformylglycinamidine synthase. (1269 aa)
	VDAG_09074	Uncharacterized protein. (339 aa)
	VDAG_09163	Uncharacterized protein. (287 aa)
	VDAG_08943	GMP synthase. (543 aa)
	VDAG_08988	Uncharacterized protein. (104 aa)

Your Current Organism:

Verticillium dahliae

NCBI taxonomy Id: 498257
Other names: V. dahliae VdLs.17, Verticillium dahliae VdLs.17

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDAG_00089	VDAG_00135	G2WRA6	G2WRF2	Glutamine synthetase.	Glutamate-cysteine ligase.	0.801
VDAG_00089	VDAG_00271	G2WRA6	G2WRT8	Glutamine synthetase.	Asparagine synthetase.	0.528
VDAG_00089	VDAG_00348	G2WRA6	G2WS15	Glutamine synthetase.	Carbamoyl-phosphate synthase arginine-specific small chain.	0.947
VDAG_00089	VDAG_00477	G2WRA6	G2WQ35	Glutamine synthetase.	PyrABCN.	0.941
VDAG_00089	VDAG_03525	G2WRA6	G2WZT3	Glutamine synthetase.	Cytoplasm protein.	0.411
VDAG_00089	VDAG_04183	G2WRA6	G2X2Y9	Glutamine synthetase.	Carbamoyl-phosphate synthase arginine-specific large chain.	0.940
VDAG_00089	VDAG_04184	G2WRA6	G2X2Z0	Glutamine synthetase.	Carbamoyl-phosphate synthase arginine-specific large chain.	0.427
VDAG_00089	VDAG_05884	G2WRA6	G2X6V2	Glutamine synthetase.	Glutamine synthetase.	0.900
VDAG_00089	VDAG_06924	G2WRA6	G2XA21	Glutamine synthetase.	Urea amidolyase.	0.771
VDAG_00089	VDAG_08943	G2WRA6	G2XFW4	Glutamine synthetase.	GMP synthase.	0.573
VDAG_00089	VDAG_09877	G2WRA6	G2XI95	Glutamine synthetase.	Glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in the mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). Belongs to the GatB/GatE family. GatB subfamily.	0.466
VDAG_00089	VDAG_10534	G2WRA6	G2XK52	Glutamine synthetase.	CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen.	0.641
VDAG_00135	VDAG_00089	G2WRF2	G2WRA6	Glutamate-cysteine ligase.	Glutamine synthetase.	0.801
VDAG_00135	VDAG_05884	G2WRF2	G2X6V2	Glutamate-cysteine ligase.	Glutamine synthetase.	0.801
VDAG_00135	VDAG_06340	G2WRF2	G2X782	Glutamate-cysteine ligase.	Glutathione synthetase.	0.990
VDAG_00241	VDAG_01520	G2WRQ8	G2WUP7	Folylpolyglutamate synthase.	C-1-tetrahydrofolate synthase.	0.714
VDAG_00241	VDAG_06886	G2WRQ8	G2X9Q4	Folylpolyglutamate synthase.	Folylpolyglutamate synthase.	0.916
VDAG_00241	VDAG_06887	G2WRQ8	G2X9Q5	Folylpolyglutamate synthase.	Folylpolyglutamate synthase; Catalyzes conversion of folates to polyglutamate derivatives allowing concentration of folate compounds in the cell and the intracellular retention of these cofactors, which are important substrates for most of the folate-dependent enzymes that are involved in one-carbon transfer reactions involved in purine, pyrimidine and amino acid synthesis; Belongs to the folylpolyglutamate synthase family.	0.916
VDAG_00271	VDAG_00089	G2WRT8	G2WRA6	Asparagine synthetase.	Glutamine synthetase.	0.528
VDAG_00271	VDAG_00477	G2WRT8	G2WQ35	Asparagine synthetase.	PyrABCN.	0.915