(34 nodes) Cytosolic small ribosomal subunit network (Verticillium dahliae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDAG_07533	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (93 aa)
	RPS1	40S ribosomal protein S1; Belongs to the eukaryotic ribosomal protein eS1 family. (256 aa)
	VDAG_08928	40S ribosomal protein S10-A. (167 aa)
	VDAG_09497	Eukaryotic translation initiation factor 2A. (721 aa)
	VDAG_10310	40S ribosomal protein S14; Belongs to the universal ribosomal protein uS11 family. (151 aa)
	VDAG_10226	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family. (148 aa)
	VDAG_10225	40S ribosomal protein S22; Belongs to the universal ribosomal protein uS8 family. (130 aa)
	VDAG_09948	40S ribosomal protein S20. (116 aa)
	VDAG_09905	PAT1 domain-containing protein. (846 aa)
	VDAG_05679	40S ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family. (143 aa)
	VDAG_10491	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (121 aa)
	VDAG_04631	Uncharacterized protein. (535 aa)
	VDAG_04596	40S ribosomal protein S28. (68 aa)
	VDAG_04314	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family. (64 aa)
	VDAG_03591	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (201 aa)
	VDAG_03062	40S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family. (151 aa)
	VDAG_03315	40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family. (153 aa)
	VDAG_02543	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family. (262 aa)
	VDAG_02440	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family. (191 aa)
	VDAG_01802	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family. (63 aa)
	VDAG_01733	40S ribosomal protein S27. (82 aa)
	VDAG_01223	40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family. (141 aa)
	VDAG_01035	Uncharacterized protein. (303 aa)
	VDAG_01034	40S ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family. (160 aa)
	VDAG_00416	Uncharacterized protein. (68 aa)
	VDAG_00058	40S ribosomal protein S19. (152 aa)
	VDAG_06378	40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family. (262 aa)
	VDAG_06045	40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family. (261 aa)
	VDAG_06246	40S ribosomal protein S21; Required for the processing of the 20S rRNA-precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Has a physiological role leading to 18S rRNA stability. (87 aa)
	VDAG_06686	WD repeat-containing protein 5B. (316 aa)
	RPS0	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. (288 aa)
	VDAG_07517	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (207 aa)
	VDAG_07518	Uncharacterized protein. (479 aa)
	VDAG_07532	40S ribosomal protein S5-B; Belongs to the universal ribosomal protein uS7 family. (212 aa)

Your Current Organism:

Verticillium dahliae

NCBI taxonomy Id: 498257
Other names: V. dahliae VdLs.17, Verticillium dahliae VdLs.17

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RPS0	RPS1	G2XAI6	G2XDR2	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	40S ribosomal protein S1; Belongs to the eukaryotic ribosomal protein eS1 family.	0.999
RPS0	VDAG_00058	G2XAI6	G2WR75	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	40S ribosomal protein S19.	0.999
RPS0	VDAG_00416	G2XAI6	G2WS83	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	Uncharacterized protein.	0.991
RPS0	VDAG_01034	G2XAI6	G2WTB1	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	40S ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family.	0.990
RPS0	VDAG_01035	G2XAI6	G2WTB2	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	Uncharacterized protein.	0.989
RPS0	VDAG_01223	G2XAI6	G2WTV0	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.	0.999
RPS0	VDAG_01733	G2XAI6	G2WVU7	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	40S ribosomal protein S27.	0.999
RPS0	VDAG_01802	G2XAI6	G2WW16	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.981
RPS0	VDAG_02440	G2XAI6	G2WXV8	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.	0.999
RPS0	VDAG_02543	G2XAI6	G2WY61	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	0.999
RPS0	VDAG_03062	G2XAI6	G2X039	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	40S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.	0.999
RPS0	VDAG_03315	G2XAI6	G2WZ73	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.	0.999
RPS0	VDAG_03591	G2XAI6	G2X1I0	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	0.999
RPS0	VDAG_04314	G2XAI6	G2X1Z0	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.981
RPS0	VDAG_04596	G2XAI6	G2X3K9	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	40S ribosomal protein S28.	0.991
RPS0	VDAG_04631	G2XAI6	G2X3P4	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	Uncharacterized protein.	0.990
RPS0	VDAG_05679	G2XAI6	G2X697	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	40S ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family.	0.999
RPS0	VDAG_06045	G2XAI6	G2X8A4	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.	0.999
RPS0	VDAG_06246	G2XAI6	G2X8V5	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	40S ribosomal protein S21; Required for the processing of the 20S rRNA-precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Has a physiological role leading to 18S rRNA stability.	0.865
RPS0	VDAG_06378	G2XAI6	G2X7C0	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.	0.999