(13 nodes) Preribosome, small subunit precursor network (Verticillium dahliae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDAG_09009	Ribosomal RNA assembly protein mis3. (216 aa)
	VDAG_08471	LTV1 protein. (428 aa)
	VDAG_07822	Ribosomal RNA-processing protein. (270 aa)
	VDAG_06378	40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family. (262 aa)
	VDAG_04969	20S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family. (472 aa)
	VDAG_04303	Nucleolar complex protein. (915 aa)
	VDAG_04251	Nucleolar complex protein. (546 aa)
	VDAG_01950	U3 small nucleolar RNA-associated protein. (553 aa)
	VDAG_01949	Ribosome biogenesis protein TSR1. (820 aa)
	VDAG_00011	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. (337 aa)
	VDAG_00680	Bystin. (482 aa)
	VDAG_10361	DRIM domain-containing protein. (2603 aa)
	VDAG_10271	Serine/threonine-protein kinase RIO2. (418 aa)

Your Current Organism:

Verticillium dahliae

NCBI taxonomy Id: 498257
Other names: V. dahliae VdLs.17, Verticillium dahliae VdLs.17

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDAG_00011	VDAG_00680	G2WQX9	G2WQN8	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	Bystin.	0.999
VDAG_00011	VDAG_01949	G2WQX9	G2WWG3	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	Ribosome biogenesis protein TSR1.	0.997
VDAG_00011	VDAG_01950	G2WQX9	G2WWG4	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	U3 small nucleolar RNA-associated protein.	0.949
VDAG_00011	VDAG_04251	G2WQX9	G2X1S7	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	Nucleolar complex protein.	0.970
VDAG_00011	VDAG_04303	G2WQX9	G2X1X9	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	Nucleolar complex protein.	0.827
VDAG_00011	VDAG_04969	G2WQX9	G2X487	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	20S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family.	0.941
VDAG_00011	VDAG_06378	G2WQX9	G2X7C0	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.	0.961
VDAG_00011	VDAG_07822	G2WQX9	G2XCE0	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	Ribosomal RNA-processing protein.	0.783
VDAG_00011	VDAG_08471	G2WQX9	G2XE89	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	LTV1 protein.	0.981
VDAG_00011	VDAG_09009	G2WQX9	G2XG30	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	Ribosomal RNA assembly protein mis3.	0.882
VDAG_00011	VDAG_10271	G2WQX9	G2XJD9	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	Serine/threonine-protein kinase RIO2.	0.987
VDAG_00011	VDAG_10361	G2WQX9	G2XJG0	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	DRIM domain-containing protein.	0.900
VDAG_00680	VDAG_00011	G2WQN8	G2WQX9	Bystin.	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	0.999
VDAG_00680	VDAG_01949	G2WQN8	G2WWG3	Bystin.	Ribosome biogenesis protein TSR1.	0.999
VDAG_00680	VDAG_01950	G2WQN8	G2WWG4	Bystin.	U3 small nucleolar RNA-associated protein.	0.999
VDAG_00680	VDAG_04251	G2WQN8	G2X1S7	Bystin.	Nucleolar complex protein.	0.999
VDAG_00680	VDAG_04303	G2WQN8	G2X1X9	Bystin.	Nucleolar complex protein.	0.999
VDAG_00680	VDAG_04969	G2WQN8	G2X487	Bystin.	20S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family.	0.999
VDAG_00680	VDAG_06378	G2WQN8	G2X7C0	Bystin.	40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.	0.998
VDAG_00680	VDAG_07822	G2WQN8	G2XCE0	Bystin.	Ribosomal RNA-processing protein.	0.872