(64 nodes) Response to endoplasmic reticulum stress network (Verticillium dahliae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDAG_08309	Ubiquitin-conjugating enzyme. (337 aa)
	VDAG_00166	Mitochondrial protein import protein MAS5. (418 aa)
	VDAG_00273	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (593 aa)
	VDAG_00446	DUF4210 domain-containing protein. (801 aa)
	VDAG_01630	Ubiquitin-protein ligase E3C. (1092 aa)
	VDAG_00873	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (1083 aa)
	VDAG_00961	Uncharacterized protein. (849 aa)
	VDAG_01398	Protein YOP1. (170 aa)
	VDAG_01497	Sulfate transporter. (449 aa)
	VDAG_02309	UDP-glucose:glycoprotein glucosyltransferase. (1439 aa)
	VDAG_02318	Ubiquitin thioesterase OTU1. (299 aa)
	VDAG_01756	Ankyrin repeat-containing protein. (682 aa)
	VDAG_02760	Uncharacterized protein. (109 aa)
	VDAG_02876	Uncharacterized protein. (1886 aa)
	VDAG_02974	Serine/threonine-protein kinase/endoribonuclease IRE1. (1236 aa)
	VDAG_02479	UBX domain-containing protein. (463 aa)
	VDAG_03130	TUG-UBL1 domain-containing protein. (501 aa)
	VDAG_03184	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (658 aa)
	VDAG_03408	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (554 aa)
	VDAG_03410	Uncharacterized protein. (223 aa)
	VDAG_03047	Protein disulfide-isomerase. (505 aa)
	VDAG_03853	Uncharacterized protein. (280 aa)
	VDAG_03654	E3 ubiquitin-protein ligase MARCH6. (1769 aa)
	VDAG_04271	26S protease subunit RPT4; Belongs to the AAA ATPase family. (373 aa)
	VDAG_04185	NPL4 protein. (673 aa)
	VDAG_04580	N-acetyltransferase. (190 aa)
	VDAG_04599	E3 ubiquitin-protein ligase HRD1. (784 aa)
	VDAG_04679	Ubiquitin-like domain-containing protein. (738 aa)
	VDAG_04749	Ubiquitin-conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family. (237 aa)
	VDAG_04984	Uncharacterized protein. (582 aa)
	VDAG_04990	Long chronological lifespan protein 2; Probable component of the endoplasmic reticulum-associated degradation (ERAD) pathway. (120 aa)
	VDAG_05083	Transport protein SEC61 subunit alpha. (484 aa)
	VDAG_05251	J domain-containing protein. (341 aa)
	VDAG_05516	78 kDa glucose-regulated protein; Belongs to the heat shock protein 70 family. (666 aa)
	VDAG_05790	ADP-ribosylation factor 1; Belongs to the small GTPase superfamily. Arf family. (181 aa)
	VDAG_05802	ADP-ribosylation factor. (235 aa)
	VDAG_05898	RING-type domain-containing protein. (188 aa)
	VDAG_05972	DUF4470 domain-containing protein. (1060 aa)
	VDAG_06072	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (616 aa)
	VDAG_06083	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (1099 aa)
	VDAG_06606	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family. (245 aa)
	VDAG_07127	AAA ATPase central domain-containing protein. (493 aa)
	VDAG_07161	Cytidylyltransferase family protein. (278 aa)
	VDAG_07641	Uncharacterized protein. (376 aa)
	VDAG_07730	Ubiquitin conjugation factor E4. (1102 aa)
	VDAG_07746	HLJ1 protein. (358 aa)
	VDAG_07883	TPR repeat protein. (669 aa)
	VDAG_08163	Uncharacterized protein. (391 aa)
	VDAG_08483	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family. (263 aa)
	VDAG_09054	AZUL domain-containing protein. (722 aa)
	VDAG_09101	Ubiquitin-conjugating enzyme. (285 aa)
	VDAG_09023	Ubiquitin-conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family. (151 aa)
	VDAG_08911	Ubiquitin fusion degradation protein. (374 aa)
	VDAG_09304	Uncharacterized protein. (150 aa)
	VDAG_09406	Ubiquitin-conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family. (166 aa)
	VDAG_09428	DnaJ and TPR domain-containing protein. (522 aa)
	VDAG_09496	Vacuolar protein sorting-associated protein. (341 aa)
	VDAG_09550	Disulfide isomerase. (396 aa)
	VDAG_09569	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (566 aa)
	VDAG_09770	Nucleotide excision repair protein RAD23. (394 aa)
	VDAG_09876	J domain-containing protein. (320 aa)
	VDAG_09962	CAAX prenyl protease; Proteolytically removes the C-terminal three residues of farnesylated proteins; Belongs to the peptidase M48A family. (454 aa)
	VDAG_10322	UBX domain-containing protein 8-A. (538 aa)
	VDAG_10417	Cell division cycle protein. (816 aa)

Your Current Organism:

Verticillium dahliae

NCBI taxonomy Id: 498257
Other names: V. dahliae VdLs.17, Verticillium dahliae VdLs.17

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDAG_00166	VDAG_05251	G2WRI3	G2X519	Mitochondrial protein import protein MAS5.	J domain-containing protein.	0.456
VDAG_00166	VDAG_05516	G2WRI3	G2X5L1	Mitochondrial protein import protein MAS5.	78 kDa glucose-regulated protein; Belongs to the heat shock protein 70 family.	0.927
VDAG_00166	VDAG_09428	G2WRI3	G2XGZ6	Mitochondrial protein import protein MAS5.	DnaJ and TPR domain-containing protein.	0.910
VDAG_00273	VDAG_03184	G2WRU0	G2WYU2	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	0.928
VDAG_00873	VDAG_03184	G2WSV0	G2WYU2	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	0.900
VDAG_00961	VDAG_02974	G2WT38	G2WXJ5	Uncharacterized protein.	Serine/threonine-protein kinase/endoribonuclease IRE1.	0.504
VDAG_00961	VDAG_03654	G2WT38	G2X1P3	Uncharacterized protein.	E3 ubiquitin-protein ligase MARCH6.	0.633
VDAG_00961	VDAG_03853	G2WT38	G2X0S4	Uncharacterized protein.	Uncharacterized protein.	0.957
VDAG_00961	VDAG_04185	G2WT38	G2X2Z1	Uncharacterized protein.	NPL4 protein.	0.657
VDAG_00961	VDAG_04599	G2WT38	G2X3L2	Uncharacterized protein.	E3 ubiquitin-protein ligase HRD1.	0.997
VDAG_00961	VDAG_05083	G2WT38	G2X4K1	Uncharacterized protein.	Transport protein SEC61 subunit alpha.	0.625
VDAG_00961	VDAG_05516	G2WT38	G2X5L1	Uncharacterized protein.	78 kDa glucose-regulated protein; Belongs to the heat shock protein 70 family.	0.727
VDAG_00961	VDAG_05898	G2WT38	G2X6W6	Uncharacterized protein.	RING-type domain-containing protein.	0.625
VDAG_00961	VDAG_06083	G2WT38	G2X8E2	Uncharacterized protein.	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	0.693
VDAG_00961	VDAG_06606	G2WT38	G2X8X4	Uncharacterized protein.	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	0.999
VDAG_00961	VDAG_07127	G2WT38	G2X9T2	Uncharacterized protein.	AAA ATPase central domain-containing protein.	0.947
VDAG_00961	VDAG_08309	G2WT38	G2XDS7	Uncharacterized protein.	Ubiquitin-conjugating enzyme.	0.606
VDAG_00961	VDAG_08483	G2WT38	G2XEA1	Uncharacterized protein.	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	0.995
VDAG_00961	VDAG_08911	G2WT38	G2XGC4	Uncharacterized protein.	Ubiquitin fusion degradation protein.	0.587
VDAG_00961	VDAG_09304	G2WT38	G2XGM2	Uncharacterized protein.	Uncharacterized protein.	0.957