STRINGSTRING
VDAG_00927 VDAG_00927 VDAG_00960 VDAG_00960 VDAG_02195 VDAG_02195 VDAG_03910 VDAG_03910 VDAG_04571 VDAG_04571 VDAG_06397 VDAG_06397 VDAG_06924 VDAG_06924
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
VDAG_00927Urease; In the C-terminal section; belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family. (836 aa)
VDAG_00960Uncharacterized protein. (115 aa)
VDAG_02195Allantoinase. (510 aa)
VDAG_03910Allantoicase. (353 aa)
VDAG_045714-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (460 aa)
VDAG_063974-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (502 aa)
VDAG_06924Urea amidolyase. (1816 aa)
Your Current Organism:
Verticillium dahliae
NCBI taxonomy Id: 498257
Other names: V. dahliae VdLs.17, Verticillium dahliae VdLs.17
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