47 items (Verticillium dahliae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDAG_08421	Mitogen-activated protein kinase organizer 1. (254 aa)
	VDAG_08384	SNRNP27 domain-containing protein. (288 aa)
	VDAG_08360	Uncharacterized protein. (441 aa)
	VDAG_08083	XAP5 domain-containing protein. (378 aa)
	VDAG_07829	Mago nashi protein. (154 aa)
	VDAG_07803	Cell cycle control protein cwf19. (707 aa)
	VDAG_07434	Tudor domain-containing protein. (509 aa)
	VDAG_07019	RNA-binding protein rsd1. (570 aa)
	VDAG_06980	SMN domain-containing protein. (173 aa)
	VDAG_06956	Uncharacterized protein. (211 aa)
	VDAG_06938	Uncharacterized protein. (470 aa)
	VDAG_06680	RRM domain-containing protein. (209 aa)
	VDAG_06654	Intron-binding protein aquarius. (1267 aa)
	VDAG_06268	Uncharacterized protein. (494 aa)
	VDAG_06568	Pinin_SDK_memA domain-containing protein. (318 aa)
	VDAG_06480	Uncharacterized protein. (394 aa)
	VDAG_06470	DUF2040 domain-containing protein. (440 aa)
	VDAG_05874	Nuclear cap-binding protein subunit 2. (186 aa)
	VDAG_05862	Zn(2)-C6 fungal-type domain-containing protein. (512 aa)
	VDAG_05804	Pre-mRNA-splicing factor cwc15. (246 aa)
	VDAG_05311	FF domain-containing protein. (583 aa)
	VDAG_05627	DUF1716 domain-containing protein. (575 aa)
	VDAG_01954	U4/U6.U5 tri-snRNP-associated protein snu66. (650 aa)
	VDAG_03123	Pre-mRNA-processing factor 39. (576 aa)
	VDAG_10305	Pre-mRNA-splicing factor spp42. (2874 aa)
	VDAG_05616	WD repeat-containing protein. (356 aa)
	VDAG_05376	zf-U1 domain-containing protein. (286 aa)
	VDAG_00760	PWI domain-containing protein. (687 aa)
	VDAG_00222	G-patch domain-containing protein. (507 aa)
	VDAG_01609	CID domain-containing protein. (820 aa)
	VDAG_00964	Uncharacterized protein. (278 aa)
	VDAG_01045	RNA-binding protein 8A. (150 aa)
	VDAG_01480	Uncharacterized protein. (207 aa)
	VDAG_01707	Rna-binding protein. (800 aa)
	VDAG_01808	Uncharacterized protein. (272 aa)
	VDAG_03445	Serine/threonine-protein kinase prp4. (838 aa)
	VDAG_10257	DnaJ domain-containing protein. (213 aa)
	VDAG_10316	Pre-mRNA-splicing factor sap114. (518 aa)
	VDAG_10054	Coiled-coil domain-containing protein. (348 aa)
	VDAG_09440	Uncharacterized protein. (562 aa)
	VDAG_09401	Uncharacterized protein. (317 aa)
	VDAG_09309	Splicing factor 3A subunit 3. (500 aa)
	VDAG_08927	Sde2_N_Ubi domain-containing protein. (288 aa)
	VDAG_08828	Pre-mRNA-splicing factor clf1. (673 aa)
	VDAG_08765	Uncharacterized protein. (148 aa)
	VDAG_08679	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (179 aa)
	VDAG_08466	Pre-mRNA-splicing factor CWC2. (411 aa)

Your Current Organism:

Verticillium dahliae

NCBI taxonomy Id: 498257
Other names: V. dahliae VdLs.17, Verticillium dahliae VdLs.17

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDAG_00222	VDAG_01609	G2WRN9	G2WSL3	G-patch domain-containing protein.	CID domain-containing protein.	0.996
VDAG_00222	VDAG_01707	G2WRN9	G2WVS1	G-patch domain-containing protein.	Rna-binding protein.	0.471
VDAG_00222	VDAG_05804	G2WRN9	G2X6M2	G-patch domain-containing protein.	Pre-mRNA-splicing factor cwc15.	0.522
VDAG_00222	VDAG_05862	G2WRN9	G2X6T0	G-patch domain-containing protein.	Zn(2)-C6 fungal-type domain-containing protein.	0.426
VDAG_00222	VDAG_07434	G2WRN9	G2XAV3	G-patch domain-containing protein.	Tudor domain-containing protein.	0.960
VDAG_00222	VDAG_09309	G2WRN9	G2XGM7	G-patch domain-containing protein.	Splicing factor 3A subunit 3.	0.863
VDAG_00222	VDAG_10316	G2WRN9	G2XJI4	G-patch domain-containing protein.	Pre-mRNA-splicing factor sap114.	0.862
VDAG_00760	VDAG_01609	G2WQW8	G2WSL3	PWI domain-containing protein.	CID domain-containing protein.	0.437
VDAG_00760	VDAG_01707	G2WQW8	G2WVS1	PWI domain-containing protein.	Rna-binding protein.	0.808
VDAG_00760	VDAG_01954	G2WQW8	G2WWG8	PWI domain-containing protein.	U4/U6.U5 tri-snRNP-associated protein snu66.	0.994
VDAG_00760	VDAG_03123	G2WQW8	G2WYN1	PWI domain-containing protein.	Pre-mRNA-processing factor 39.	0.933
VDAG_00760	VDAG_03445	G2WQW8	G2WZK3	PWI domain-containing protein.	Serine/threonine-protein kinase prp4.	0.792
VDAG_00760	VDAG_05311	G2WQW8	G2X5Z5	PWI domain-containing protein.	FF domain-containing protein.	0.843
VDAG_00760	VDAG_05874	G2WQW8	G2X6U2	PWI domain-containing protein.	Nuclear cap-binding protein subunit 2.	0.992
VDAG_00760	VDAG_06568	G2WQW8	G2X7W0	PWI domain-containing protein.	Pinin_SDK_memA domain-containing protein.	0.596
VDAG_00760	VDAG_06680	G2WQW8	G2X948	PWI domain-containing protein.	RRM domain-containing protein.	0.426
VDAG_00760	VDAG_06938	G2WQW8	G2XA35	PWI domain-containing protein.	Uncharacterized protein.	0.562
VDAG_00760	VDAG_07019	G2WQW8	G2XAB6	PWI domain-containing protein.	RNA-binding protein rsd1.	0.875
VDAG_00760	VDAG_08679	G2WQW8	G2XEU4	PWI domain-containing protein.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	0.995
VDAG_00760	VDAG_08765	G2WQW8	G2XF33	PWI domain-containing protein.	Uncharacterized protein.	0.499