58 items (Verticillium dahliae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDAG_08541	Uncharacterized protein. (1407 aa)
	VDAG_08700	Uncharacterized protein. (357 aa)
	VDAG_08795	Uncharacterized protein. (1200 aa)
	VDAG_08811	RPOL4c domain-containing protein. (160 aa)
	VDAG_08833	THO complex subunit 3. (339 aa)
	VDAG_09021	COP9 signalosome complex subunit 12. (471 aa)
	VDAG_08864	RRM domain-containing protein. (256 aa)
	VDAG_09437	RNP domain-containing protein. (458 aa)
	VDAG_09471	Nucleoporin Pom152. (1270 aa)
	VDAG_09482	Smad nuclear-interacting protein. (318 aa)
	VDAG_09875	ATP-dependent RNA helicase DHH1; Belongs to the DEAD box helicase family. (492 aa)
	VDAG_10111	Transport protein SEC13; Belongs to the WD repeat SEC13 family. (288 aa)
	VDAG_00380	RanBD1 domain-containing protein. (491 aa)
	VDAG_00412	Nuclear pore complex subunit; Belongs to the WD repeat SEC13 family. (544 aa)
	VDAG_01629	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (759 aa)
	VDAG_01000	Dynein light chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures. (100 aa)
	VDAG_01078	COP9 signalosome complex subunit 12. (473 aa)
	VDAG_01219	Nucleoporin NIC96. (1177 aa)
	VDAG_01351	Nucleoporin GLE1. (548 aa)
	VDAG_01354	Uncharacterized protein. (128 aa)
	VDAG_02322	Importin subunit beta-3. (1096 aa)
	VDAG_01670	Transcription factor IWS1. (426 aa)
	VDAG_01780	ATP-dependent RNA helicase SUB2. (513 aa)
	VDAG_01848	Poly(A)+ RNA export protein. (358 aa)
	VDAG_02719	Prion formation protein. (1112 aa)
	VDAG_02729	Nucleoporin nup44. (358 aa)
	VDAG_02678	Uncharacterized protein. (455 aa)
	VDAG_03152	mRNA export factor mex67. (649 aa)
	VDAG_03173	Uncharacterized protein. (213 aa)
	VDAG_03000	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (901 aa)
	VDAG_03949	Uncharacterized protein. (107 aa)
	VDAG_04009	Uncharacterized protein. (729 aa)
	VDAG_04257	Uncharacterized protein. (1563 aa)
	VDAG_04185	NPL4 protein. (673 aa)
	VDAG_04215	RNA binding domain-containing protein. (329 aa)
	VDAG_04655	SAP domain-containing protein. (279 aa)
	VDAG_05489	C3HC zinc finger domain-containing protein. (521 aa)
	VDAG_05737	Nup188_C domain-containing protein. (1795 aa)
	VDAG_05874	Nuclear cap-binding protein subunit 2. (186 aa)
	VDAG_05875	Uncharacterized protein. (888 aa)
	VDAG_05897	Uncharacterized protein. (1665 aa)
	VDAG_06655	THO complex subunit 1. (858 aa)
	VDAG_06907	E3 ubiquitin-protein ligase. (3972 aa)
	VDAG_07497	Nuclear envelope protein. (638 aa)
	VDAG_07628	RNA-binding post-transcriptional regulator cip2. (601 aa)
	VDAG_07456	Nucleoporin nup189. (1956 aa)
	VDAG_00205	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (1112 aa)
	VDAG_00146	ATP-dependent RNA helicase DBP5. (485 aa)
	VDAG_00073	E3 ubiquitin-protein ligase. (806 aa)
	VDAG_00742	Nucleoporin Nup157/170. (1396 aa)
	VDAG_00613	THO complex subunit 2. (2374 aa)
	VDAG_08473	Uncharacterized protein. (429 aa)
	VDAG_08472	Nucear export factor. (635 aa)
	VDAG_08459	60S ribosomal subunit assembly/export protein LOC1. (202 aa)
	VDAG_08432	Cap binding protein. (795 aa)
	VDAG_07953	Uncharacterized protein. (286 aa)
	VDAG_08510	Uncharacterized protein. (346 aa)
	VDAG_08512	Uncharacterized protein. (887 aa)

Your Current Organism:

Verticillium dahliae

NCBI taxonomy Id: 498257
Other names: V. dahliae VdLs.17, Verticillium dahliae VdLs.17

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDAG_00146	VDAG_01351	G2WRG3	G2WU78	ATP-dependent RNA helicase DBP5.	Nucleoporin GLE1.	0.975
VDAG_00146	VDAG_01629	G2WRG3	G2WSN3	ATP-dependent RNA helicase DBP5.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.428
VDAG_00146	VDAG_01848	G2WRG3	G2WW62	ATP-dependent RNA helicase DBP5.	Poly(A)+ RNA export protein.	0.613
VDAG_00146	VDAG_03152	G2WRG3	G2WYR0	ATP-dependent RNA helicase DBP5.	mRNA export factor mex67.	0.768
VDAG_00146	VDAG_04257	G2WRG3	G2X1T3	ATP-dependent RNA helicase DBP5.	Uncharacterized protein.	0.993
VDAG_00146	VDAG_07456	G2WRG3	G2XB26	ATP-dependent RNA helicase DBP5.	Nucleoporin nup189.	0.421
VDAG_00146	VDAG_08864	G2WRG3	G2XG77	ATP-dependent RNA helicase DBP5.	RRM domain-containing protein.	0.402
VDAG_00205	VDAG_03000	G2WRM2	G2WZX7	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.414
VDAG_00205	VDAG_05875	G2WRM2	G2X6U3	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	Uncharacterized protein.	0.426
VDAG_00205	VDAG_07456	G2WRM2	G2XB26	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	Nucleoporin nup189.	0.825
VDAG_00205	VDAG_08795	G2WRM2	G2XF63	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	Uncharacterized protein.	0.854
VDAG_00205	VDAG_10111	G2WRM2	G2XIR3	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	Transport protein SEC13; Belongs to the WD repeat SEC13 family.	0.420
VDAG_00380	VDAG_00412	G2WS47	G2WS79	RanBD1 domain-containing protein.	Nuclear pore complex subunit; Belongs to the WD repeat SEC13 family.	0.800
VDAG_00380	VDAG_00742	G2WS47	G2WQV0	RanBD1 domain-containing protein.	Nucleoporin Nup157/170.	0.862
VDAG_00380	VDAG_01219	G2WS47	G2WTU6	RanBD1 domain-containing protein.	Nucleoporin NIC96.	0.879
VDAG_00380	VDAG_01351	G2WS47	G2WU78	RanBD1 domain-containing protein.	Nucleoporin GLE1.	0.533
VDAG_00380	VDAG_01848	G2WS47	G2WW62	RanBD1 domain-containing protein.	Poly(A)+ RNA export protein.	0.726
VDAG_00380	VDAG_02729	G2WS47	G2WWV0	RanBD1 domain-containing protein.	Nucleoporin nup44.	0.825
VDAG_00380	VDAG_03000	G2WS47	G2WZX7	RanBD1 domain-containing protein.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.820
VDAG_00380	VDAG_03152	G2WS47	G2WYR0	RanBD1 domain-containing protein.	mRNA export factor mex67.	0.714