54 items (Verticillium dahliae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDAG_08811	RPOL4c domain-containing protein. (160 aa)
	VDAG_08997	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. (594 aa)
	VDAG_09021	COP9 signalosome complex subunit 12. (471 aa)
	VDAG_08864	RRM domain-containing protein. (256 aa)
	VDAG_09418	DnaJ domain-containing protein. (560 aa)
	VDAG_09437	RNP domain-containing protein. (458 aa)
	VDAG_09457	MSN5 protein. (1272 aa)
	VDAG_09472	U3 small nucleolar RNA-associated protein 22. (1127 aa)
	VDAG_09482	Smad nuclear-interacting protein. (318 aa)
	VDAG_09778	Exportin-T; tRNA nucleus export receptor which facilitates tRNA translocation across the nuclear pore complex. Belongs to the exportin family. (1020 aa)
	VDAG_09691	Uncharacterized protein. (786 aa)
	VDAG_09692	Ran-specific GTPase-activating protein. (257 aa)
	VDAG_09982	Importin alpha re-exporter. (958 aa)
	VDAG_10000	Exportin-1. (1078 aa)
	VDAG_10155	Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family. (427 aa)
	VDAG_01108	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily. (609 aa)
	VDAG_01078	COP9 signalosome complex subunit 12. (473 aa)
	VDAG_00909	Ribosome biogenesis ATPase RIX7. (784 aa)
	VDAG_00289	Protein kinase domain-containing protein ppk3. (770 aa)
	VDAG_00073	E3 ubiquitin-protein ligase. (806 aa)
	VDAG_00613	THO complex subunit 2. (2374 aa)
	VDAG_01351	Nucleoporin GLE1. (548 aa)
	VDAG_01354	Uncharacterized protein. (128 aa)
	VDAG_02322	Importin subunit beta-3. (1096 aa)
	VDAG_02333	Uncharacterized protein. (66 aa)
	VDAG_01646	Zuotin. (444 aa)
	VDAG_01670	Transcription factor IWS1. (426 aa)
	VDAG_01848	Poly(A)+ RNA export protein. (358 aa)
	VDAG_02719	Prion formation protein. (1112 aa)
	VDAG_02860	Bud site selection protein. (258 aa)
	VDAG_03152	mRNA export factor mex67. (649 aa)
	VDAG_03173	Uncharacterized protein. (213 aa)
	VDAG_03006	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family. (218 aa)
	VDAG_03949	Uncharacterized protein. (107 aa)
	VDAG_04236	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (196 aa)
	VDAG_04655	SAP domain-containing protein. (279 aa)
	VDAG_04708	ATP-binding cassette sub-family F member 2. (632 aa)
	VDAG_05489	C3HC zinc finger domain-containing protein. (521 aa)
	VDAG_05875	Uncharacterized protein. (888 aa)
	VDAG_06378	40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family. (262 aa)
	TIF6	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family. (246 aa)
	VDAG_06655	THO complex subunit 1. (858 aa)
	VDAG_07532	40S ribosomal protein S5-B; Belongs to the universal ribosomal protein uS7 family. (212 aa)
	VDAG_07706	Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family. (750 aa)
	VDAG_07628	RNA-binding post-transcriptional regulator cip2. (601 aa)
	VDAG_08432	Cap binding protein. (795 aa)
	VDAG_08470	Nucleolar GTP-binding protein. (643 aa)
	VDAG_08471	LTV1 protein. (428 aa)
	VDAG_08472	Nucear export factor. (635 aa)
	VDAG_08473	Uncharacterized protein. (429 aa)
	VDAG_08700	Uncharacterized protein. (357 aa)
	VDAG_08776	Translation initiation factor RLI1. (607 aa)
	VDAG_08784	Nuclear GTP-binding protein NUG1. (545 aa)
	VDAG_08833	THO complex subunit 3. (339 aa)

Your Current Organism:

Verticillium dahliae

NCBI taxonomy Id: 498257
Other names: V. dahliae VdLs.17, Verticillium dahliae VdLs.17

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TIF6	VDAG_00909	G2X7D6	G2WSY6	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family.	Ribosome biogenesis ATPase RIX7.	0.507
TIF6	VDAG_01108	G2X7D6	G2WTI5	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family.	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	0.988
TIF6	VDAG_02333	G2X7D6	G2WVJ2	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family.	Uncharacterized protein.	0.977
TIF6	VDAG_04236	G2X7D6	G2X1R2	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family.	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	0.528
TIF6	VDAG_04708	G2X7D6	G2X3X1	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family.	ATP-binding cassette sub-family F member 2.	0.596
TIF6	VDAG_06378	G2X7D6	G2X7C0	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family.	40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.	0.781
TIF6	VDAG_07532	G2X7D6	G2XBK0	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family.	40S ribosomal protein S5-B; Belongs to the universal ribosomal protein uS7 family.	0.501
TIF6	VDAG_07706	G2X7D6	G2XBS0	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family.	Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family.	0.853
TIF6	VDAG_08470	G2X7D6	G2XE88	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family.	Nucleolar GTP-binding protein.	0.981
TIF6	VDAG_08776	G2X7D6	G2XF44	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family.	Translation initiation factor RLI1.	0.696
TIF6	VDAG_08784	G2X7D6	G2XF52	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family.	Nuclear GTP-binding protein NUG1.	0.979
TIF6	VDAG_08997	G2X7D6	G2XG18	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.996
TIF6	VDAG_09418	G2X7D6	G2XGY6	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family.	DnaJ domain-containing protein.	0.606
TIF6	VDAG_10000	G2X7D6	G2XIL8	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family.	Exportin-1.	0.459
TIF6	VDAG_10155	G2X7D6	G2XJ23	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family.	Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family.	0.645
VDAG_00289	VDAG_09778	G2WRV6	G2XHM4	Protein kinase domain-containing protein ppk3.	Exportin-T; tRNA nucleus export receptor which facilitates tRNA translocation across the nuclear pore complex. Belongs to the exportin family.	0.582
VDAG_00613	VDAG_01848	G2WQH1	G2WW62	THO complex subunit 2.	Poly(A)+ RNA export protein.	0.576
VDAG_00613	VDAG_03152	G2WQH1	G2WYR0	THO complex subunit 2.	mRNA export factor mex67.	0.770
VDAG_00613	VDAG_03173	G2WQH1	G2WYT1	THO complex subunit 2.	Uncharacterized protein.	0.997
VDAG_00613	VDAG_03949	G2WQH1	G2X120	THO complex subunit 2.	Uncharacterized protein.	0.404