(17 nodes) Regulation of vesicle-mediated transport network (Verticillium dahliae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDAG_10474	Subtilisin Carlsberg. (748 aa)
	VDAG_10481	SNI2 protein. (969 aa)
	VDAG_00073	E3 ubiquitin-protein ligase. (806 aa)
	VDAG_00203	Ubiquitin carboxyl-terminal hydrolase. (927 aa)
	VDAG_00249	Uncharacterized protein. (958 aa)
	VDAG_00869	RINT-1 family protein. (810 aa)
	VDAG_01122	Methyltranfer_dom domain-containing protein. (280 aa)
	VDAG_02777	GTP-binding protein RHO3. (183 aa)
	VDAG_03248	Peflin. (309 aa)
	VDAG_03424	Uncharacterized protein. (81 aa)
	VDAG_03883	Uncharacterized protein. (389 aa)
	VDAG_04587	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family. (240 aa)
	VDAG_05931	NTF2 domain-containing protein. (446 aa)
	VDAG_06361	Cell division control protein. (193 aa)
	VDAG_08100	Serin endopeptidase. (840 aa)
	VDAG_09626	Subtilisin Carlsberg; Belongs to the peptidase S8 family. (1255 aa)
	VDAG_10115	ROP protein; Belongs to the STXBP/unc-18/SEC1 family. (613 aa)

Your Current Organism:

Verticillium dahliae

NCBI taxonomy Id: 498257
Other names: V. dahliae VdLs.17, Verticillium dahliae VdLs.17

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDAG_00073	VDAG_00203	G2WR90	G2WRM0	E3 ubiquitin-protein ligase.	Ubiquitin carboxyl-terminal hydrolase.	0.409
VDAG_00073	VDAG_06361	G2WR90	G2X7A3	E3 ubiquitin-protein ligase.	Cell division control protein.	0.401
VDAG_00203	VDAG_00073	G2WRM0	G2WR90	Ubiquitin carboxyl-terminal hydrolase.	E3 ubiquitin-protein ligase.	0.409
VDAG_00203	VDAG_05931	G2WRM0	G2X6Z9	Ubiquitin carboxyl-terminal hydrolase.	NTF2 domain-containing protein.	0.995
VDAG_02777	VDAG_06361	G2WWZ8	G2X7A3	GTP-binding protein RHO3.	Cell division control protein.	0.535
VDAG_02777	VDAG_10481	G2WWZ8	G2XJZ9	GTP-binding protein RHO3.	SNI2 protein.	0.476
VDAG_05931	VDAG_00203	G2X6Z9	G2WRM0	NTF2 domain-containing protein.	Ubiquitin carboxyl-terminal hydrolase.	0.995
VDAG_06361	VDAG_00073	G2X7A3	G2WR90	Cell division control protein.	E3 ubiquitin-protein ligase.	0.401
VDAG_06361	VDAG_02777	G2X7A3	G2WWZ8	Cell division control protein.	GTP-binding protein RHO3.	0.535
VDAG_10115	VDAG_10481	G2XIY3	G2XJZ9	ROP protein; Belongs to the STXBP/unc-18/SEC1 family.	SNI2 protein.	0.561
VDAG_10481	VDAG_02777	G2XJZ9	G2WWZ8	SNI2 protein.	GTP-binding protein RHO3.	0.476
VDAG_10481	VDAG_10115	G2XJZ9	G2XIY3	SNI2 protein.	ROP protein; Belongs to the STXBP/unc-18/SEC1 family.	0.561