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VDAG_00012 VDAG_00012 LSM4 LSM4 VDAG_00682 VDAG_00682 VDAG_00760 VDAG_00760 VDAG_00058 VDAG_00058 VDAG_00164 VDAG_00164 VDAG_00165 VDAG_00165 VDAG_00373 VDAG_00373 VDAG_00399 VDAG_00399 VDAG_00416 VDAG_00416 TIF35 TIF35 VDAG_00436 VDAG_00436 VDAG_01625 VDAG_01625 VDAG_00887 VDAG_00887 VDAG_00888 VDAG_00888 VDAG_00969 VDAG_00969 VDAG_01001 VDAG_01001 VDAG_01132 VDAG_01132 VDAG_01181 VDAG_01181 VDAG_01329 VDAG_01329 VDAG_01473 VDAG_01473 VDAG_01482 VDAG_01482 VDAG_01508 VDAG_01508 TIF34 TIF34 VDAG_01669 VDAG_01669 VDAG_01678 VDAG_01678 VDAG_01686 VDAG_01686 VDAG_01688 VDAG_01688 VDAG_01733 VDAG_01733 VDAG_01788 VDAG_01788 VDAG_01824 VDAG_01824 VDAG_01960 VDAG_01960 VDAG_02005 VDAG_02005 VDAG_02007 VDAG_02007 VDAG_02023 VDAG_02023 VDAG_02726 VDAG_02726 VDAG_02758 VDAG_02758 VDAG_02771 VDAG_02771 VDAG_02854 VDAG_02854 VDAG_02865 VDAG_02865 PRT1 PRT1 VDAG_02419 VDAG_02419 VDAG_02645 VDAG_02645 VDAG_03123 VDAG_03123 VDAG_03149 VDAG_03149 HCR1 HCR1 VDAG_03213 VDAG_03213 VDAG_03244 VDAG_03244 VDAG_03305 VDAG_03305 VDAG_03315 VDAG_03315 VDAG_03364 VDAG_03364 VDAG_03425 VDAG_03425 VDAG_03460 VDAG_03460 VDAG_03509 VDAG_03509 VDAG_03542 VDAG_03542 VDAG_03063 VDAG_03063 VDAG_03680 VDAG_03680 VDAG_03726 VDAG_03726 VDAG_03984 VDAG_03984 VDAG_04047 VDAG_04047 VDAG_04264 VDAG_04264 VDAG_04294 VDAG_04294 VDAG_04364 VDAG_04364 VDAG_04443 VDAG_04443 VDAG_04458 VDAG_04458 VDAG_04134 VDAG_04134 VDAG_04191 VDAG_04191 VDAG_04596 VDAG_04596 VDAG_05247 VDAG_05247 VDAG_05301 VDAG_05301 VDAG_05356 VDAG_05356 VDAG_05715 VDAG_05715 VDAG_05766 VDAG_05766 VDAG_05889 VDAG_05889 VDAG_05894 VDAG_05894 VDAG_06306 VDAG_06306 VDAG_06350 VDAG_06350 TIF32 TIF32 VDAG_06468 VDAG_06468 VDAG_06486 VDAG_06486 VDAG_06567 VDAG_06567 VDAG_06135 VDAG_06135 VDAG_06186 VDAG_06186 VDAG_06187 VDAG_06187 VDAG_06626 VDAG_06626 VDAG_06693 VDAG_06693 VDAG_06792 VDAG_06792 VDAG_06980 VDAG_06980 RPS0 RPS0 VDAG_07096 VDAG_07096 VDAG_07420 VDAG_07420 VDAG_07434 VDAG_07434 VDAG_07437 VDAG_07437 VDAG_07495 VDAG_07495 VDAG_07532 VDAG_07532 VDAG_07813 VDAG_07813 VDAG_07967 VDAG_07967 VDAG_07999 VDAG_07999 VDAG_08000 VDAG_08000 VDAG_08418 VDAG_08418 VDAG_08457 VDAG_08457 VDAG_08466 VDAG_08466 VDAG_08470 VDAG_08470 VDAG_08504 VDAG_08504 VDAG_08577 VDAG_08577 VDAG_08609 VDAG_08609 VDAG_08628 VDAG_08628 VDAG_08630 VDAG_08630 VDAG_08679 VDAG_08679 VDAG_08683 VDAG_08683 VDAG_08765 VDAG_08765 VDAG_08811 VDAG_08811 VDAG_08828 VDAG_08828 VDAG_08829 VDAG_08829 VDAG_08997 VDAG_08997 VDAG_08873 VDAG_08873 VDAG_09240 VDAG_09240 VDAG_09827 VDAG_09827 VDAG_09905 VDAG_09905 INT6 INT6 VDAG_09979 VDAG_09979 VDAG_10009 VDAG_10009 VDAG_10139 VDAG_10139 VDAG_10155 VDAG_10155 VDAG_10214 VDAG_10214 VDAG_10255 VDAG_10255 VDAG_10282 VDAG_10282 VDAG_10305 VDAG_10305 NIP1 NIP1 VDAG_10310 VDAG_10310 VDAG_10400 VDAG_10400
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
VDAG_00012Pre-mRNA-splicing factor prp1. (718 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (130 aa)
VDAG_00682Cell division control protein. (411 aa)
VDAG_00760PWI domain-containing protein. (687 aa)
VDAG_0005840S ribosomal protein S19. (152 aa)
VDAG_00164Uncharacterized protein. (397 aa)
VDAG_00165Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16. (973 aa)
VDAG_00373TPR repeat-containing protein. (577 aa)
VDAG_00399Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (94 aa)
VDAG_00416Uncharacterized protein. (68 aa)
TIF35Eukaryotic translation initiation factor 3 subunit G; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. This subunit can bind 18S rRNA. (297 aa)
VDAG_00436Peptidase family M20/M25/M40 protein. (861 aa)
VDAG_01625Ribosomal_S7 domain-containing protein. (314 aa)
VDAG_00887Ribosome biogenesis protein BRX1. (315 aa)
VDAG_00888F-box domain-containing protein. (426 aa)
VDAG_00969U5 small nuclear ribonucleoprotein component. (983 aa)
VDAG_01001Multiple RNA-binding domain-containing protein. (866 aa)
VDAG_01132Pre-mRNA-processing factor 17. (531 aa)
VDAG_01181Isoflavone reductase family protein. (305 aa)
VDAG_01329U4/U6.U5 tri-snRNP-associated protein. (549 aa)
VDAG_01473Periodic tryptophan protein. (861 aa)
VDAG_01482Eukaryotic translation initiation factor 3 subunit F; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (366 aa)
VDAG_0150860S ribosomal protein L5. (299 aa)
TIF34Eukaryotic translation initiation factor 3 subunit I; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (333 aa)
VDAG_01669Protein kinase dsk1. (521 aa)
VDAG_01678Serine-threonine kinase receptor-associated protein. (357 aa)
VDAG_01686Protein kinase domain-containing protein. (260 aa)
VDAG_01688Protein kinase domain-containing protein. (343 aa)
VDAG_0173340S ribosomal protein S27. (82 aa)
VDAG_01788Eukaryotic translation initiation factor 1A; Belongs to the eIF-1A family. (154 aa)
VDAG_01824RNA polymerase-associated protein RTF1. (610 aa)
VDAG_01960KH domain-containing protein. (524 aa)
VDAG_02005Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43. (770 aa)
VDAG_02007LSM domain-containing protein. (79 aa)
VDAG_02023DUF866 domain-containing protein. (160 aa)
VDAG_02726Ribosome biogenesis protein Sqt1. (500 aa)
VDAG_02758RNA-binding motif protein. (333 aa)
VDAG_02771Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (391 aa)
VDAG_02854WD repeat-containing protein. (515 aa)
VDAG_02865Serine/threonine-protein kinase SRPK3. (285 aa)
PRT1Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family. (745 aa)
VDAG_02419Serine/threonine-protein kinase SRPK2. (463 aa)
VDAG_02645Pre-mRNA-splicing factor ISY1. (245 aa)
VDAG_03123Pre-mRNA-processing factor 39. (576 aa)
VDAG_03149Uncharacterized protein. (401 aa)
HCR1Eukaryotic translation initiation factor 3 subunit J; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (275 aa)
VDAG_03213Eukaryotic translation initiation factor 3 subunit D; mRNA cap-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. In the eIF-3 complex, eif3d specifically recognizes and binds the 7- methylguanosine cap of a subset of mRNAs. (555 aa)
VDAG_03244Pre-mRNA-splicing factor ATP-dependent RNA helicase prp16. (963 aa)
VDAG_03305Ribosome biogenesis protein RPF2. (317 aa)
VDAG_0331540S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family. (153 aa)
VDAG_03364Serine/threonine protein kinase. (421 aa)
VDAG_03425Translation machinery-associated protein 20; Involved in translation; Belongs to the TMA20 family. (193 aa)
VDAG_03460Mitochondrial ribosomal protein S18. (248 aa)
VDAG_03509Splicing factor 3A subunit 2. (241 aa)
VDAG_03542Ribosome biogenesis protein SSF1. (462 aa)
VDAG_03063U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (589 aa)
VDAG_03680Protein kinase domain-containing protein. (461 aa)
VDAG_03726Uncharacterized protein. (305 aa)
VDAG_03984Eukaryotic translation initiation factor 3 subunit K; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (231 aa)
VDAG_04047Box C/D snoRNA accumulation. (560 aa)
VDAG_04264U2 snRNP component prp10. (1223 aa)
VDAG_0429460S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (312 aa)
VDAG_0436460S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family. (202 aa)
VDAG_04443Mni1p. (366 aa)
VDAG_04458Eukaryotic translation initiation factor 2 subunit gamma. (510 aa)
VDAG_04134Eukaryotic translation initiation factor 3 subunit M; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (459 aa)
VDAG_04191Pre-mRNA-splicing factor brr2. (2213 aa)
VDAG_0459640S ribosomal protein S28. (68 aa)
VDAG_05247Protein kinase domain-containing protein. (418 aa)
VDAG_05301LUC7 protein. (271 aa)
VDAG_05356Protein kinase domain-containing protein. (371 aa)
VDAG_05715Uncharacterized protein. (234 aa)
VDAG_05766Cleavage and polyadenylation specificity factor subunit 5. (268 aa)
VDAG_05889Eukaryotic translation initiation factor 5. (428 aa)
VDAG_05894Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (247 aa)
VDAG_0630660S ribosomal protein L23a. (157 aa)
VDAG_06350Midasin; Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits; Belongs to the midasin family. (4992 aa)
TIF32Eukaryotic translation initiation factor 3 subunit A; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (1066 aa)
VDAG_06468NmrA domain-containing protein. (305 aa)
VDAG_0648660S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (185 aa)
VDAG_06567Pre-mRNA-splicing factor ini1. (110 aa)
VDAG_06135Uncharacterized protein. (408 aa)
VDAG_06186Small nuclear ribonucleoprotein G. (85 aa)
VDAG_06187Uncharacterized protein. (474 aa)
VDAG_06626SCA7 domain-containing protein. (417 aa)
VDAG_06693Uncharacterized protein. (1082 aa)
VDAG_06792HIT-type domain-containing protein. (293 aa)
VDAG_06980SMN domain-containing protein. (173 aa)
RPS040S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. (288 aa)
VDAG_07096Mitochondrial ribosomal protein S19; Belongs to the universal ribosomal protein uS19 family. (93 aa)
VDAG_07420GST N-terminal domain-containing protein. (373 aa)
VDAG_07434Tudor domain-containing protein. (509 aa)
VDAG_07437Uncharacterized protein. (504 aa)
VDAG_07495Serine/threonine-protein kinase SRPK3. (381 aa)
VDAG_0753240S ribosomal protein S5-B; Belongs to the universal ribosomal protein uS7 family. (212 aa)
VDAG_07813Eukaryotic translation initiation factor 3 subunit H; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (365 aa)
VDAG_07967GU4 nucleic-binding protein. (422 aa)
VDAG_07999Protein kinase domain-containing protein. (156 aa)
VDAG_08000Naf1p. (606 aa)
VDAG_08418Cell cycle control protein cwf16. (247 aa)
VDAG_08457Uncharacterized protein. (897 aa)
VDAG_08466Pre-mRNA-splicing factor CWC2. (411 aa)
VDAG_08470Nucleolar GTP-binding protein. (643 aa)
VDAG_08504Uncharacterized protein. (365 aa)
VDAG_0857760S ribosomal protein L10-B. (222 aa)
VDAG_08609Eukaryotic translation initiation factor 2 subunit beta. (288 aa)
VDAG_08628Meiotic recombination protein DMC1. (312 aa)
VDAG_08630F-box domain-containing protein. (524 aa)
VDAG_08679U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (179 aa)
VDAG_08683GTP-binding protein EsdC. (326 aa)
VDAG_08765Uncharacterized protein. (148 aa)
VDAG_08811RPOL4c domain-containing protein. (160 aa)
VDAG_08828Pre-mRNA-splicing factor clf1. (673 aa)
VDAG_08829Pre-mRNA-processing factor 31. (596 aa)
VDAG_08997Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. (594 aa)
VDAG_08873IDC1 protein. (1580 aa)
VDAG_09240Small nuclear ribonucleoprotein Sm D2. (122 aa)
VDAG_09827J domain-containing protein. (246 aa)
VDAG_09905PAT1 domain-containing protein. (846 aa)
INT6Eukaryotic translation initiation factor 3 subunit E; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (438 aa)
VDAG_09979Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL38 family. (80 aa)
VDAG_10009Splicing factor 3B subunit 2. (534 aa)
VDAG_10139Protein kinase domain-containing protein. (213 aa)
VDAG_10155Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family. (427 aa)
VDAG_10214G-patch domain-containing protein. (862 aa)
VDAG_10255Uncharacterized protein. (93 aa)
VDAG_10282Eukaryotic translation initiation factor 3. (237 aa)
VDAG_10305Pre-mRNA-splicing factor spp42. (2874 aa)
NIP1Eukaryotic translation initiation factor 3 subunit C; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (872 aa)
VDAG_1031040S ribosomal protein S14; Belongs to the universal ribosomal protein uS11 family. (151 aa)
VDAG_10400rRNA biogenesis protein RRP5. (1790 aa)
Your Current Organism:
Verticillium dahliae
NCBI taxonomy Id: 498257
Other names: V. dahliae VdLs.17, Verticillium dahliae VdLs.17
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