52 items (Verticillium dahliae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDAG_00247	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (125 aa)
	VDAG_00399	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (94 aa)
	VDAG_01609	CID domain-containing protein. (820 aa)
	VDAG_00969	U5 small nuclear ribonucleoprotein component. (983 aa)
	VDAG_01954	U4/U6.U5 tri-snRNP-associated protein snu66. (650 aa)
	VDAG_02007	LSM domain-containing protein. (79 aa)
	VDAG_02758	RNA-binding motif protein. (333 aa)
	VDAG_02556	Splicing factor subunit; Belongs to the SF3B5 family. (117 aa)
	LSM8	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (99 aa)
	VDAG_03123	Pre-mRNA-processing factor 39. (576 aa)
	VDAG_03182	U2 small nuclear ribonucleoprotein B. (194 aa)
	VDAG_03509	Splicing factor 3A subunit 2. (241 aa)
	VDAG_03032	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. (121 aa)
	VDAG_03069	Pre-mRNA branch site protein p14. (117 aa)
	VDAG_03726	Uncharacterized protein. (305 aa)
	VDAG_04264	U2 snRNP component prp10. (1223 aa)
	VDAG_04370	RRM domain-containing protein. (440 aa)
	VDAG_04431	U4/U6 small nuclear ribonucleoprotein Prp4. (515 aa)
	VDAG_04191	Pre-mRNA-splicing factor brr2. (2213 aa)
	VDAG_05301	LUC7 protein. (271 aa)
	VDAG_05311	FF domain-containing protein. (583 aa)
	VDAG_05715	Uncharacterized protein. (234 aa)
	VDAG_05893	U1 small nuclear ribonucleoprotein. (416 aa)
	VDAG_05945	Cell cycle control protein cwf14. (148 aa)
	VDAG_06567	Pre-mRNA-splicing factor ini1. (110 aa)
	VDAG_06186	Small nuclear ribonucleoprotein G. (85 aa)
	VDAG_06693	Uncharacterized protein. (1082 aa)
	VDAG_08384	SNRNP27 domain-containing protein. (288 aa)
	LSM5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (80 aa)
	VDAG_08454	Splicing factor 3B subunit 4. (498 aa)
	VDAG_08679	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (179 aa)
	VDAG_08683	GTP-binding protein EsdC. (326 aa)
	VDAG_08765	Uncharacterized protein. (148 aa)
	VDAG_08777	Pre-mRNA-processing protein prp40. (839 aa)
	VDAG_08829	Pre-mRNA-processing factor 31. (596 aa)
	VDAG_08847	Uncharacterized protein. (321 aa)
	VDAG_08873	IDC1 protein. (1580 aa)
	VDAG_08912	GYF domain-containing protein. (466 aa)
	VDAG_09240	Small nuclear ribonucleoprotein Sm D2. (122 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
	VDAG_10009	Splicing factor 3B subunit 2. (534 aa)
	VDAG_10034	U4/U6 small nuclear ribonucleoprotein Prp3. (458 aa)
	VDAG_10349	SMB protein. (220 aa)
	VDAG_10316	Pre-mRNA-splicing factor sap114. (518 aa)
	VDAG_10320	Sm domain-containing protein. (140 aa)
	VDAG_10305	Pre-mRNA-splicing factor spp42. (2874 aa)
	VDAG_10424	U1 small nuclear ribonucleoprotein A. (246 aa)
	VDAG_00538	U2 small nuclear ribonucleoprotein A. (264 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (130 aa)
	VDAG_00710	C2H2-type domain-containing protein. (236 aa)
	VDAG_00760	PWI domain-containing protein. (687 aa)
	VDAG_00012	Pre-mRNA-splicing factor prp1. (718 aa)

Your Current Organism:

Verticillium dahliae

NCBI taxonomy Id: 498257
Other names: V. dahliae VdLs.17, Verticillium dahliae VdLs.17

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LSM3	LSM4	G2XHY5	G2WQI7	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
LSM3	LSM5	G2XHY5	G2XE44	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.999
LSM3	LSM8	G2XHY5	G2WYL5	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
LSM3	VDAG_00012	G2XHY5	G2WR29	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pre-mRNA-splicing factor prp1.	0.970
LSM3	VDAG_00247	G2XHY5	G2WRR4	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.937
LSM3	VDAG_00399	G2XHY5	G2WS66	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.993
LSM3	VDAG_00538	G2XHY5	G2WQ96	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U2 small nuclear ribonucleoprotein A.	0.901
LSM3	VDAG_00710	G2XHY5	G2WQR8	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	C2H2-type domain-containing protein.	0.946
LSM3	VDAG_00969	G2XHY5	G2WT46	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U5 small nuclear ribonucleoprotein component.	0.990
LSM3	VDAG_01954	G2XHY5	G2WWG8	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U4/U6.U5 tri-snRNP-associated protein snu66.	0.994
LSM3	VDAG_02007	G2XHY5	G2WWM1	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	LSM domain-containing protein.	0.982
LSM3	VDAG_02556	G2XHY5	G2WY74	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Splicing factor subunit; Belongs to the SF3B5 family.	0.897
LSM3	VDAG_02758	G2XHY5	G2WWX9	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	RNA-binding motif protein.	0.578
LSM3	VDAG_03032	G2XHY5	G2X009	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	0.970
LSM3	VDAG_03069	G2XHY5	G2X046	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pre-mRNA branch site protein p14.	0.680
LSM3	VDAG_03182	G2XHY5	G2WYU0	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U2 small nuclear ribonucleoprotein B.	0.766
LSM3	VDAG_03509	G2XHY5	G2WZR7	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Splicing factor 3A subunit 2.	0.856
LSM3	VDAG_04191	G2XHY5	G2X2Z7	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pre-mRNA-splicing factor brr2.	0.989
LSM3	VDAG_04264	G2XHY5	G2X1U0	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U2 snRNP component prp10.	0.846
LSM3	VDAG_04431	G2XHY5	G2X2A7	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U4/U6 small nuclear ribonucleoprotein Prp4.	0.993