20 items (Verticillium dahliae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDAG_00162	Membrane protein. (240 aa)
	VDAG_10356	Uncharacterized protein. (1029 aa)
	VDAG_10035	Histone H3; Belongs to the histone H3 family. (136 aa)
	VDAG_08310	B-block_TFIIIC domain-containing protein. (1974 aa)
	VDAG_08162	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs. (283 aa)
	VDAG_07801	Metallothionein-I transcription activator. (81 aa)
	VDAG_07450	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (340 aa)
	VDAG_06605	Histone H3. (115 aa)
	VDAG_06559	TATA-binding protein-associated factor MOT1. (1860 aa)
	VDAG_06451	DNA-directed RNA polymerases I. (149 aa)
	VDAG_06285	Uncharacterized protein. (971 aa)
	VDAG_05947	DNA-directed RNA polymerases I and III subunit RPAC2. (146 aa)
	VDAG_04392	DNA-directed RNA polymerase II subunit RPB7. (171 aa)
	VDAG_03035	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1231 aa)
	VDAG_03280	DNA-directed RNA polymerase III subunit 22.9 kDa polypeptide. (174 aa)
	VDAG_02976	SWIB domain-containing protein. (268 aa)
	VDAG_01824	RNA polymerase-associated protein RTF1. (610 aa)
	VDAG_00994	DNA-directed RNA polymerases I/II/III subunit 10. (76 aa)
	VDAG_00414	Uncharacterized protein. (456 aa)
	VDAG_00359	Uncharacterized protein. (569 aa)

Your Current Organism:

Verticillium dahliae

NCBI taxonomy Id: 498257
Other names: V. dahliae VdLs.17, Verticillium dahliae VdLs.17

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDAG_00162	VDAG_00359	G2WRH9	G2WS26	Membrane protein.	Uncharacterized protein.	0.625
VDAG_00162	VDAG_02976	G2WRH9	G2WXJ7	Membrane protein.	SWIB domain-containing protein.	0.482
VDAG_00359	VDAG_00162	G2WS26	G2WRH9	Uncharacterized protein.	Membrane protein.	0.625
VDAG_00359	VDAG_02976	G2WS26	G2WXJ7	Uncharacterized protein.	SWIB domain-containing protein.	0.447
VDAG_00414	VDAG_00994	G2WS81	G2WT71	Uncharacterized protein.	DNA-directed RNA polymerases I/II/III subunit 10.	0.628
VDAG_00414	VDAG_02976	G2WS81	G2WXJ7	Uncharacterized protein.	SWIB domain-containing protein.	0.508
VDAG_00414	VDAG_03035	G2WS81	G2X012	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.716
VDAG_00414	VDAG_05947	G2WS81	G2X715	Uncharacterized protein.	DNA-directed RNA polymerases I and III subunit RPAC2.	0.660
VDAG_00414	VDAG_06451	G2WS81	G2X7J3	Uncharacterized protein.	DNA-directed RNA polymerases I.	0.506
VDAG_00414	VDAG_07801	G2WS81	G2XCB9	Uncharacterized protein.	Metallothionein-I transcription activator.	0.562
VDAG_00994	VDAG_00414	G2WT71	G2WS81	DNA-directed RNA polymerases I/II/III subunit 10.	Uncharacterized protein.	0.628
VDAG_00994	VDAG_01824	G2WT71	G2WW38	DNA-directed RNA polymerases I/II/III subunit 10.	RNA polymerase-associated protein RTF1.	0.854
VDAG_00994	VDAG_03035	G2WT71	G2X012	DNA-directed RNA polymerases I/II/III subunit 10.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
VDAG_00994	VDAG_03280	G2WT71	G2WZ38	DNA-directed RNA polymerases I/II/III subunit 10.	DNA-directed RNA polymerase III subunit 22.9 kDa polypeptide.	0.998
VDAG_00994	VDAG_04392	G2WT71	G2X268	DNA-directed RNA polymerases I/II/III subunit 10.	DNA-directed RNA polymerase II subunit RPB7.	0.999
VDAG_00994	VDAG_05947	G2WT71	G2X715	DNA-directed RNA polymerases I/II/III subunit 10.	DNA-directed RNA polymerases I and III subunit RPAC2.	0.999
VDAG_00994	VDAG_06451	G2WT71	G2X7J3	DNA-directed RNA polymerases I/II/III subunit 10.	DNA-directed RNA polymerases I.	0.999
VDAG_00994	VDAG_06605	G2WT71	G2X8X3	DNA-directed RNA polymerases I/II/III subunit 10.	Histone H3.	0.840
VDAG_00994	VDAG_07801	G2WT71	G2XCB9	DNA-directed RNA polymerases I/II/III subunit 10.	Metallothionein-I transcription activator.	0.999
VDAG_00994	VDAG_08162	G2WT71	G2XDD0	DNA-directed RNA polymerases I/II/III subunit 10.	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs.	0.975