STRINGSTRING
VDAG_05774 VDAG_05774 VDAG_05893 VDAG_05893 VDAG_05919 VDAG_05919 VDAG_06395 VDAG_06395 VDAG_06427 VDAG_06427 VDAG_06459 VDAG_06459 VDAG_06469 VDAG_06469 VDAG_06480 VDAG_06480 VDAG_06268 VDAG_06268 VDAG_06186 VDAG_06186 VDAG_06187 VDAG_06187 VDAG_06654 VDAG_06654 VDAG_06723 VDAG_06723 VDAG_07019 VDAG_07019 VDAG_07434 VDAG_07434 VDAG_07203 VDAG_07203 VDAG_07628 VDAG_07628 VDAG_07568 VDAG_07568 VDAG_07803 VDAG_07803 VDAG_07985 VDAG_07985 VDAG_08309 VDAG_08309 VDAG_08360 VDAG_08360 VDAG_08418 VDAG_08418 VDAG_08421 VDAG_08421 VDAG_08454 VDAG_08454 VDAG_08533 VDAG_08533 VDAG_08679 VDAG_08679 VDAG_05715 VDAG_05715 VDAG_05311 VDAG_05311 VDAG_05627 VDAG_05627 VDAG_05616 VDAG_05616 VDAG_05376 VDAG_05376 VDAG_05006 VDAG_05006 VDAG_04652 VDAG_04652 VDAG_04565 VDAG_04565 VDAG_01916 VDAG_01916 VDAG_00538 VDAG_00538 VDAG_00760 VDAG_00760 VDAG_00164 VDAG_00164 VDAG_00165 VDAG_00165 VDAG_00894 VDAG_00894 VDAG_00964 VDAG_00964 VDAG_00969 VDAG_00969 VDAG_01132 VDAG_01132 VDAG_01166 VDAG_01166 VDAG_01480 VDAG_01480 VDAG_04191 VDAG_04191 VDAG_04131 VDAG_04131 VDAG_04370 VDAG_04370 VDAG_04264 VDAG_04264 VDAG_04038 VDAG_04038 VDAG_03813 VDAG_03813 VDAG_03770 VDAG_03770 VDAG_03726 VDAG_03726 VDAG_03063 VDAG_03063 VDAG_03032 VDAG_03032 VDAG_03004 VDAG_03004 VDAG_03509 VDAG_03509 VDAG_03244 VDAG_03244 VDAG_03182 VDAG_03182 VDAG_03123 VDAG_03123 VDAG_01644 VDAG_01644 VDAG_10424 VDAG_10424 VDAG_10422 VDAG_10422 VDAG_10320 VDAG_10320 VDAG_10316 VDAG_10316 VDAG_10360 VDAG_10360 VDAG_10349 VDAG_10349 VDAG_10253 VDAG_10253 VDAG_10214 VDAG_10214 VDAG_10131 VDAG_10131 VDAG_10054 VDAG_10054 VDAG_10009 VDAG_10009 VDAG_09827 VDAG_09827 VDAG_09437 VDAG_09437 VDAG_09401 VDAG_09401 VDAG_09309 VDAG_09309 VDAG_09233 VDAG_09233 VDAG_08927 VDAG_08927 VDAG_08924 VDAG_08924 VDAG_08829 VDAG_08829 VDAG_08828 VDAG_08828 VDAG_08777 VDAG_08777 VDAG_08765 VDAG_08765 VDAG_01971 VDAG_01971 VDAG_02005 VDAG_02005 VDAG_02007 VDAG_02007 VDAG_02778 VDAG_02778 VDAG_02435 VDAG_02435 VDAG_02439 VDAG_02439 VDAG_02645 VDAG_02645 VDAG_02689 VDAG_02689 VDAG_05729 VDAG_05729
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
VDAG_05774RRM domain-containing protein. (424 aa)
VDAG_05893U1 small nuclear ribonucleoprotein. (416 aa)
VDAG_05919Pre-mRNA-splicing factor SPP2. (403 aa)
VDAG_06395Uncharacterized protein. (1216 aa)
VDAG_06427Pre-mRNA-splicing factor RSE1. (1230 aa)
VDAG_06459Uncharacterized protein. (596 aa)
VDAG_06469LMBR1 domain-containing protein. (702 aa)
VDAG_06480Uncharacterized protein. (394 aa)
VDAG_06268Uncharacterized protein. (494 aa)
VDAG_06186Small nuclear ribonucleoprotein G. (85 aa)
VDAG_06187Uncharacterized protein. (474 aa)
VDAG_06654Intron-binding protein aquarius. (1267 aa)
VDAG_06723Uncharacterized protein. (457 aa)
VDAG_07019RNA-binding protein rsd1. (570 aa)
VDAG_07434Tudor domain-containing protein. (509 aa)
VDAG_07203BAG domain-containing protein. (383 aa)
VDAG_07628RNA-binding post-transcriptional regulator cip2. (601 aa)
VDAG_07568Uncharacterized protein. (175 aa)
VDAG_07803Cell cycle control protein cwf19. (707 aa)
VDAG_07985Pre-mRNA-splicing factor ATP-dependent RNA helicase prp22. (1190 aa)
VDAG_08309Ubiquitin-conjugating enzyme. (337 aa)
VDAG_08360Uncharacterized protein. (441 aa)
VDAG_08418Cell cycle control protein cwf16. (247 aa)
VDAG_08421Mitogen-activated protein kinase organizer 1. (254 aa)
VDAG_08454Splicing factor 3B subunit 4. (498 aa)
VDAG_08533Pre-mRNA-processing protein. (536 aa)
VDAG_08679U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (179 aa)
VDAG_05715Uncharacterized protein. (234 aa)
VDAG_05311FF domain-containing protein. (583 aa)
VDAG_05627DUF1716 domain-containing protein. (575 aa)
VDAG_05616WD repeat-containing protein. (356 aa)
VDAG_05376zf-U1 domain-containing protein. (286 aa)
VDAG_05006Endonuclease/exonuclease/phosphatase family. (509 aa)
VDAG_04652Branchpoint-bridging protein. (590 aa)
VDAG_04565Uncharacterized protein. (472 aa)
VDAG_01916Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (153 aa)
VDAG_00538U2 small nuclear ribonucleoprotein A. (264 aa)
VDAG_00760PWI domain-containing protein. (687 aa)
VDAG_00164Uncharacterized protein. (397 aa)
VDAG_00165Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16. (973 aa)
VDAG_00894ATP-dependent RNA helicase DHX8. (675 aa)
VDAG_00964Uncharacterized protein. (278 aa)
VDAG_00969U5 small nuclear ribonucleoprotein component. (983 aa)
VDAG_01132Pre-mRNA-processing factor 17. (531 aa)
VDAG_01166Zn(2)-C6 fungal-type domain-containing protein. (520 aa)
VDAG_01480Uncharacterized protein. (207 aa)
VDAG_04191Pre-mRNA-splicing factor brr2. (2213 aa)
VDAG_04131Peptidyl-prolyl cis-trans isomerase cyp15. (620 aa)
VDAG_04370RRM domain-containing protein. (440 aa)
VDAG_04264U2 snRNP component prp10. (1223 aa)
VDAG_04038Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (167 aa)
VDAG_03813Trichodiene oxygenase; Belongs to the cytochrome P450 family. (508 aa)
VDAG_03770Uncharacterized protein. (645 aa)
VDAG_03726Uncharacterized protein. (305 aa)
VDAG_03063U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (589 aa)
VDAG_03032Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. (121 aa)
VDAG_03004PWI domain-containing protein. (397 aa)
VDAG_03509Splicing factor 3A subunit 2. (241 aa)
VDAG_03244Pre-mRNA-splicing factor ATP-dependent RNA helicase prp16. (963 aa)
VDAG_03182U2 small nuclear ribonucleoprotein B. (194 aa)
VDAG_03123Pre-mRNA-processing factor 39. (576 aa)
VDAG_01644Pre-mRNA-splicing factor slt-11. (381 aa)
VDAG_10424U1 small nuclear ribonucleoprotein A. (246 aa)
VDAG_10422Pre-mRNA-splicing factor SYF1. (822 aa)
VDAG_10320Sm domain-containing protein. (140 aa)
VDAG_10316Pre-mRNA-splicing factor sap114. (518 aa)
VDAG_10360CwfJ domain-containing protein. (553 aa)
VDAG_10349SMB protein. (220 aa)
VDAG_10253Pre-mRNA-splicing factor cef-1. (780 aa)
VDAG_10214G-patch domain-containing protein. (862 aa)
VDAG_10131Pre-mRNA-splicing factor CWC26. (332 aa)
VDAG_10054Coiled-coil domain-containing protein. (348 aa)
VDAG_10009Splicing factor 3B subunit 2. (534 aa)
VDAG_09827J domain-containing protein. (246 aa)
VDAG_09437RNP domain-containing protein. (458 aa)
VDAG_09401Uncharacterized protein. (317 aa)
VDAG_09309Splicing factor 3A subunit 3. (500 aa)
VDAG_09233MFAP1 domain-containing protein. (278 aa)
VDAG_08927Sde2_N_Ubi domain-containing protein. (288 aa)
VDAG_08924Peptidyl-prolyl cis-trans isomerase E. (153 aa)
VDAG_08829Pre-mRNA-processing factor 31. (596 aa)
VDAG_08828Pre-mRNA-splicing factor clf1. (673 aa)
VDAG_08777Pre-mRNA-processing protein prp40. (839 aa)
VDAG_08765Uncharacterized protein. (148 aa)
VDAG_01971Branchpoint-bridging protein. (327 aa)
VDAG_02005Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43. (770 aa)
VDAG_02007LSM domain-containing protein. (79 aa)
VDAG_02778Pre-mRNA-splicing factor cwc25. (372 aa)
VDAG_02435Pre-mRNA-splicing factor cwc24. (336 aa)
VDAG_02439Pre-mRNA-splicing factor SLU7. (468 aa)
VDAG_02645Pre-mRNA-splicing factor ISY1. (245 aa)
VDAG_02689Pre-mRNA-splicing factor 38A. (272 aa)
VDAG_05729Pre-mRNA-splicing factor CWC21. (175 aa)
Your Current Organism:
Verticillium dahliae
NCBI taxonomy Id: 498257
Other names: V. dahliae VdLs.17, Verticillium dahliae VdLs.17
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