STRINGSTRING
VDAG_10349 VDAG_10349 VDAG_08912 VDAG_08912 VDAG_06186 VDAG_06186 VDAG_05616 VDAG_05616 VDAG_04461 VDAG_04461 VDAG_03726 VDAG_03726 VDAG_04191 VDAG_04191 VDAG_10305 VDAG_10305
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
VDAG_10349SMB protein. (220 aa)
VDAG_08912GYF domain-containing protein. (466 aa)
VDAG_06186Small nuclear ribonucleoprotein G. (85 aa)
VDAG_05616WD repeat-containing protein. (356 aa)
VDAG_04461Pre-mRNA-splicing ATP-dependent RNA helicase PRP28; Belongs to the DEAD box helicase family. (683 aa)
VDAG_03726Uncharacterized protein. (305 aa)
VDAG_04191Pre-mRNA-splicing factor brr2. (2213 aa)
VDAG_10305Pre-mRNA-splicing factor spp42. (2874 aa)
Your Current Organism:
Verticillium dahliae
NCBI taxonomy Id: 498257
Other names: V. dahliae VdLs.17, Verticillium dahliae VdLs.17
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