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VDAG_04370 VDAG_04370 VDAG_00538 VDAG_00538 VDAG_00399 VDAG_00399 VDAG_06567 VDAG_06567 VDAG_08454 VDAG_08454 VDAG_10009 VDAG_10009 VDAG_01609 VDAG_01609 VDAG_02556 VDAG_02556 VDAG_03069 VDAG_03069 VDAG_06427 VDAG_06427
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
VDAG_04370RRM domain-containing protein. (440 aa)
VDAG_00538U2 small nuclear ribonucleoprotein A. (264 aa)
VDAG_00399Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (94 aa)
VDAG_06567Pre-mRNA-splicing factor ini1. (110 aa)
VDAG_08454Splicing factor 3B subunit 4. (498 aa)
VDAG_10009Splicing factor 3B subunit 2. (534 aa)
VDAG_01609CID domain-containing protein. (820 aa)
VDAG_02556Splicing factor subunit; Belongs to the SF3B5 family. (117 aa)
VDAG_03069Pre-mRNA branch site protein p14. (117 aa)
VDAG_06427Pre-mRNA-splicing factor RSE1. (1230 aa)
Your Current Organism:
Verticillium dahliae
NCBI taxonomy Id: 498257
Other names: V. dahliae VdLs.17, Verticillium dahliae VdLs.17
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