(78 nodes) Large ribosomal subunit network (Verticillium dahliae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDAG_06695	Mitochondrial large ribosomal subunit protein; Belongs to the universal ribosomal protein uL22 family. (311 aa)
	VDAG_03283	60S acidic ribosomal protein P2; Belongs to the eukaryotic ribosomal protein P1/P2 family. (110 aa)
	VDAG_03129	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family. (106 aa)
	VDAG_02518	60S ribosomal protein L24. (160 aa)
	VDAG_02507	60S ribosomal protein L14-B. (147 aa)
	VDAG_02496	Uncharacterized protein. (404 aa)
	VDAG_02494	Ribosomal protein L37; Binds to the 23S rRNA. (97 aa)
	VDAG_02441	60S ribosomal protein L21-B. (160 aa)
	VDAG_01978	60S ribosomal protein L26-1. (136 aa)
	VDAG_01948	Urease accessory protein ureG. (273 aa)
	VDAG_01944	50S ribosomal protein Mrp49. (199 aa)
	VDAG_01508	60S ribosomal protein L5. (299 aa)
	VDAG_01484	50S ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family. (203 aa)
	VDAG_01336	60S ribosomal protein L4-B. (352 aa)
	VDAG_01335	Uncharacterized protein. (910 aa)
	VDAG_01255	54S ribosomal protein L24. (281 aa)
	VDAG_01151	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family. (110 aa)
	VDAG_01079	60S ribosomal protein L20. (209 aa)
	VDAG_00978	60S ribosomal protein L31. (123 aa)
	VDAG_00899	54S ribosomal protein L9. (337 aa)
	VDAG_01592	Uncharacterized protein. (105 aa)
	VDAG_00178	60S ribosomal protein L22. (126 aa)
	VDAG_00092	Uncharacterized protein. (202 aa)
	VDAG_00733	54S ribosomal protein L3. (413 aa)
	VDAG_00525	50S ribosomal protein L11; Belongs to the universal ribosomal protein uL11 family. (152 aa)
	VDAG_00508	Uncharacterized protein. (186 aa)
	VDAG_03285	Uncharacterized protein. (210 aa)
	VDAG_03752	Uncharacterized protein. (241 aa)
	VDAG_03918	60S ribosomal protein L27-A. (135 aa)
	VDAG_04294	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (312 aa)
	VDAG_04358	60S ribosomal protein L35. (125 aa)
	VDAG_04364	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family. (202 aa)
	VDAG_04460	Mitoc_mL59 domain-containing protein. (166 aa)
	VDAG_04489	60S ribosomal protein L33-B. (109 aa)
	VDAG_04123	Mitochondrial ribosomal protein L44. (98 aa)
	VDAG_04560	60S ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family. (165 aa)
	VDAG_04646	Uncharacterized protein. (198 aa)
	VDAG_04766	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family. (251 aa)
	VDAG_05663	60S ribosomal protein L34-B. (148 aa)
	VDAG_05693	54S ribosomal protein L23. (179 aa)
	VDAG_05698	60S ribosomal protein L32. (131 aa)
	VDAG_05786	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family. (217 aa)
	VDAG_05789	60S ribosomal protein L39. (51 aa)
	VDAG_05828	Uncharacterized protein. (210 aa)
	VDAG_05892	Mitochondrial 54S ribosomal protein L51. (137 aa)
	VDAG_05940	60S ribosomal protein L2. (254 aa)
	VDAG_06306	60S ribosomal protein L23a. (157 aa)
	VDAG_06316	60S ribosomal protein L28. (158 aa)
	VDAG_06562	50S ribosomal subunit L30. (326 aa)
	VDAG_06273	60S ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family. (139 aa)
	VDAG_06608	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family. (63 aa)
	VDAG_06682	60S ribosomal protein L18. (183 aa)
	VDAG_06690	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (193 aa)
	VDAG_06768	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family. (203 aa)
	VDAG_07170	Uncharacterized protein. (132 aa)
	VDAG_06918	KOW motif domain-containing protein. (324 aa)
	VDAG_06970	Ribosomal_L30 domain-containing protein; Belongs to the universal ribosomal protein uL30 family. (96 aa)
	VDAG_07059	54S ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family. (251 aa)
	VDAG_07204	60S ribosomal protein L16; Belongs to the universal ribosomal protein uL13 family. (202 aa)
	VDAG_07875	Uncharacterized protein. (171 aa)
	VDAG_08443	54S ribosomal protein L7. (356 aa)
	VDAG_08470	Nucleolar GTP-binding protein. (643 aa)
	VDAG_08577	60S ribosomal protein L10-B. (222 aa)
	VDAG_08578	60S ribosomal protein L30. (110 aa)
	VDAG_08793	60S ribosomal protein L9. (193 aa)
	VDAG_08839	50S ribosomal protein L2. (392 aa)
	VDAG_08999	50S ribosomal protein L4. (271 aa)
	VDAG_09243	Uncharacterized protein. (482 aa)
	VDAG_09244	50S ribosomal protein L4. (320 aa)
	VDAG_09547	60S ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family. (149 aa)
	VDAG_09722	Mitochondrial 54S ribosomal protein L38; Belongs to the universal ribosomal protein uL14 family. (128 aa)
	VDAG_09576	Uncharacterized protein. (151 aa)
	VDAG_09676	54S ribosomal protein L10. (343 aa)
	VDAG_09954	Uncharacterized protein. (164 aa)
	VDAG_09961	Uncharacterized protein. (140 aa)
	VDAG_09979	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL38 family. (80 aa)
	VDAG_10073	54S ribosomal protein L6; Belongs to the universal ribosomal protein uL6 family. (249 aa)
	VDAG_10228	60S ribosomal protein L43. (92 aa)

Your Current Organism:

Verticillium dahliae

NCBI taxonomy Id: 498257
Other names: V. dahliae VdLs.17, Verticillium dahliae VdLs.17

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDAG_00092	VDAG_00508	G2WRA9	G2WQ66	Uncharacterized protein.	Uncharacterized protein.	0.847
VDAG_00092	VDAG_00525	G2WRA9	G2WQ83	Uncharacterized protein.	50S ribosomal protein L11; Belongs to the universal ribosomal protein uL11 family.	0.517
VDAG_00092	VDAG_00733	G2WRA9	G2WQU1	Uncharacterized protein.	54S ribosomal protein L3.	0.875
VDAG_00092	VDAG_00899	G2WRA9	G2WSX6	Uncharacterized protein.	54S ribosomal protein L9.	0.916
VDAG_00092	VDAG_01151	G2WRA9	G2WTM8	Uncharacterized protein.	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	0.876
VDAG_00092	VDAG_01255	G2WRA9	G2WTY2	Uncharacterized protein.	54S ribosomal protein L24.	0.862
VDAG_00092	VDAG_01335	G2WRA9	G2WU62	Uncharacterized protein.	Uncharacterized protein.	0.519
VDAG_00092	VDAG_01336	G2WRA9	G2WU63	Uncharacterized protein.	60S ribosomal protein L4-B.	0.519
VDAG_00092	VDAG_01484	G2WRA9	G2WUL1	Uncharacterized protein.	50S ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.	0.870
VDAG_00092	VDAG_01592	G2WRA9	G2WSJ6	Uncharacterized protein.	Uncharacterized protein.	0.843
VDAG_00092	VDAG_01944	G2WRA9	G2WWF8	Uncharacterized protein.	50S ribosomal protein Mrp49.	0.551
VDAG_00092	VDAG_01948	G2WRA9	G2WWG2	Uncharacterized protein.	Urease accessory protein ureG.	0.521
VDAG_00092	VDAG_03285	G2WRA9	G2WZ43	Uncharacterized protein.	Uncharacterized protein.	0.870
VDAG_00092	VDAG_03752	G2WRA9	G2X0H3	Uncharacterized protein.	Uncharacterized protein.	0.936
VDAG_00092	VDAG_04123	G2WRA9	G2X2S9	Uncharacterized protein.	Mitochondrial ribosomal protein L44.	0.507
VDAG_00092	VDAG_04460	G2WRA9	G2X2D6	Uncharacterized protein.	Mitoc_mL59 domain-containing protein.	0.853
VDAG_00092	VDAG_04646	G2WRA9	G2X3Q9	Uncharacterized protein.	Uncharacterized protein.	0.845
VDAG_00092	VDAG_05693	G2WRA9	G2X6B1	Uncharacterized protein.	54S ribosomal protein L23.	0.847
VDAG_00092	VDAG_05828	G2WRA9	G2X6P6	Uncharacterized protein.	Uncharacterized protein.	0.489
VDAG_00092	VDAG_05892	G2WRA9	G2X6W0	Uncharacterized protein.	Mitochondrial 54S ribosomal protein L51.	0.881