7 items (Verticillium dahliae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDAG_00462	CCCH zinc finger and RRM domain-containing protein. (664 aa)
	VDAG_05678	Vacuolar-sorting protein SNF8. (254 aa)
	VDAG_06596	RRM domain-containing protein. (650 aa)
	VDAG_06621	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (604 aa)
	VDAG_08798	YTH domain-containing protein. (448 aa)
	VDAG_09052	Uncharacterized protein. (187 aa)
	VDAG_09053	Uncharacterized protein. (239 aa)

Your Current Organism:

Verticillium dahliae

NCBI taxonomy Id: 498257
Other names: V. dahliae VdLs.17, Verticillium dahliae VdLs.17

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDAG_00462	VDAG_08798	G2WQ20	G2XF66	CCCH zinc finger and RRM domain-containing protein.	YTH domain-containing protein.	0.538
VDAG_06596	VDAG_08798	G2X8W4	G2XF66	RRM domain-containing protein.	YTH domain-containing protein.	0.524
VDAG_06621	VDAG_08798	G2X8Y9	G2XF66	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	YTH domain-containing protein.	0.995
VDAG_08798	VDAG_00462	G2XF66	G2WQ20	YTH domain-containing protein.	CCCH zinc finger and RRM domain-containing protein.	0.538
VDAG_08798	VDAG_06596	G2XF66	G2X8W4	YTH domain-containing protein.	RRM domain-containing protein.	0.524
VDAG_08798	VDAG_06621	G2XF66	G2X8Y9	YTH domain-containing protein.	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	0.995
VDAG_08798	VDAG_09052	G2XF66	G2XG73	YTH domain-containing protein.	Uncharacterized protein.	0.995
VDAG_08798	VDAG_09053	G2XF66	G2XG74	YTH domain-containing protein.	Uncharacterized protein.	0.995
VDAG_09052	VDAG_08798	G2XG73	G2XF66	Uncharacterized protein.	YTH domain-containing protein.	0.995
VDAG_09052	VDAG_09053	G2XG73	G2XG74	Uncharacterized protein.	Uncharacterized protein.	0.623
VDAG_09053	VDAG_08798	G2XG74	G2XF66	Uncharacterized protein.	YTH domain-containing protein.	0.995
VDAG_09053	VDAG_09052	G2XG74	G2XG73	Uncharacterized protein.	Uncharacterized protein.	0.623