(5 nodes) Clathrin-coated endocytic vesicle network (Verticillium dahliae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDAG_01984	AP-2 complex subunit alpha. (278 aa)
	VDAG_00249	Uncharacterized protein. (958 aa)
	VDAG_00643	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (143 aa)
	VDAG_06136	Uncharacterized protein. (589 aa)
	VDAG_01985	AP-2 complex subunit alpha. (516 aa)

Your Current Organism:

Verticillium dahliae

NCBI taxonomy Id: 498257
Other names: V. dahliae VdLs.17, Verticillium dahliae VdLs.17

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDAG_00643	VDAG_01984	G2WQK1	G2WWJ8	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	AP-2 complex subunit alpha.	0.993
VDAG_00643	VDAG_01985	G2WQK1	G2WWJ9	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	AP-2 complex subunit alpha.	0.999
VDAG_01984	VDAG_00643	G2WWJ8	G2WQK1	AP-2 complex subunit alpha.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.993
VDAG_01984	VDAG_01985	G2WWJ8	G2WWJ9	AP-2 complex subunit alpha.	AP-2 complex subunit alpha.	0.953
VDAG_01985	VDAG_00643	G2WWJ9	G2WQK1	AP-2 complex subunit alpha.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.999
VDAG_01985	VDAG_01984	G2WWJ9	G2WWJ8	AP-2 complex subunit alpha.	AP-2 complex subunit alpha.	0.953