8 items (Verticillium dahliae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDAG_05919	Pre-mRNA-splicing factor SPP2. (403 aa)
	VDAG_04522	G-patch domain-containing protein. (361 aa)
	VDAG_01707	Rna-binding protein. (800 aa)
	VDAG_00222	G-patch domain-containing protein. (507 aa)
	VDAG_10214	G-patch domain-containing protein. (862 aa)
	VDAG_10116	G-patch domain-containing protein. (243 aa)
	VDAG_10109	G patch domain-containing protein. (1183 aa)
	VDAG_09416	Uncharacterized protein. (690 aa)

Your Current Organism:

Verticillium dahliae

NCBI taxonomy Id: 498257
Other names: V. dahliae VdLs.17, Verticillium dahliae VdLs.17

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDAG_00222	VDAG_01707	G2WRN9	G2WVS1	G-patch domain-containing protein.	Rna-binding protein.	0.471
VDAG_00222	VDAG_10214	G2WRN9	G2XJ82	G-patch domain-containing protein.	G-patch domain-containing protein.	0.447
VDAG_01707	VDAG_00222	G2WVS1	G2WRN9	Rna-binding protein.	G-patch domain-containing protein.	0.471
VDAG_01707	VDAG_04522	G2WVS1	G2X2J8	Rna-binding protein.	G-patch domain-containing protein.	0.644
VDAG_01707	VDAG_10214	G2WVS1	G2XJ82	Rna-binding protein.	G-patch domain-containing protein.	0.415
VDAG_04522	VDAG_01707	G2X2J8	G2WVS1	G-patch domain-containing protein.	Rna-binding protein.	0.644
VDAG_04522	VDAG_09416	G2X2J8	G2XGY4	G-patch domain-containing protein.	Uncharacterized protein.	0.952
VDAG_04522	VDAG_10116	G2X2J8	G2XIY4	G-patch domain-containing protein.	G-patch domain-containing protein.	0.644
VDAG_09416	VDAG_04522	G2XGY4	G2X2J8	Uncharacterized protein.	G-patch domain-containing protein.	0.952
VDAG_09416	VDAG_10214	G2XGY4	G2XJ82	Uncharacterized protein.	G-patch domain-containing protein.	0.618
VDAG_10116	VDAG_04522	G2XIY4	G2X2J8	G-patch domain-containing protein.	G-patch domain-containing protein.	0.644
VDAG_10214	VDAG_00222	G2XJ82	G2WRN9	G-patch domain-containing protein.	G-patch domain-containing protein.	0.447
VDAG_10214	VDAG_01707	G2XJ82	G2WVS1	G-patch domain-containing protein.	Rna-binding protein.	0.415
VDAG_10214	VDAG_09416	G2XJ82	G2XGY4	G-patch domain-containing protein.	Uncharacterized protein.	0.618