107 items (Verticillium dahliae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDAG_06313	Transcriptional repressor rco-1. (612 aa)
	VDAG_06355	F-box/WD repeat-containing protein. (673 aa)
	VDAG_06445	Polyadenylation factor subunit 2. (540 aa)
	VDAG_06546	WD repeat-containing protein. (550 aa)
	VDAG_06551	Coronin; Belongs to the WD repeat coronin family. (616 aa)
	VDAG_06042	U3 small nucleolar RNA-associated protein. (912 aa)
	VDAG_06055	WD_REPEATS_REGION domain-containing protein. (1105 aa)
	VDAG_06059	Mut11. (792 aa)
	VDAG_06090	WD repeat-containing protein slp1. (600 aa)
	VDAG_06113	Set1 complex component swd1. (477 aa)
	VDAG_06150	WD repeat-containing protein. (1315 aa)
	VDAG_06643	WD repeat-containing protein. (382 aa)
	VDAG_06658	MAK11 protein. (494 aa)
	VDAG_06686	WD repeat-containing protein 5B. (316 aa)
	VDAG_06735	WD repeat-containing protein. (419 aa)
	VDAG_06951	WD repeat-containing protein. (1027 aa)
	VDAG_07036	SOF1 protein. (448 aa)
	VDAG_07054	Uncharacterized protein. (647 aa)
	VDAG_07099	Striatin Pro11. (844 aa)
	VDAG_07486	Meiotic recombination protein rec14. (336 aa)
	VDAG_07489	WD repeat-containing protein. (403 aa)
	VDAG_07490	Minichromosome loss protein. (855 aa)
	VDAG_08049	WD repeat-containing protein. (380 aa)
	VDAG_08421	Mitogen-activated protein kinase organizer 1. (254 aa)
	VDAG_08450	Elongator complex protein. (824 aa)
	VDAG_08833	THO complex subunit 3. (339 aa)
	VDAG_08848	Protein phosphatase PP2A regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family. (481 aa)
	VDAG_08859	Pre-mRNA-splicing factor prp46. (482 aa)
	VDAG_08923	Transport protein SEC31. (220 aa)
	VDAG_09539	WD repeat-containing protein. (565 aa)
	VDAG_09717	Sulfur controller 2. (646 aa)
	VDAG_09743	Beta-TrCP. (759 aa)
	VDAG_09657	WD repeat-containing protein. (1048 aa)
	VDAG_09660	Ribosome assembly protein RRB1. (492 aa)
	VDAG_09663	Cell cycle control protein cwf8. (483 aa)
	VDAG_09683	WD_REPEATS_REGION domain-containing protein. (457 aa)
	VDAG_09689	Guanine nucleotide-binding protein subunit beta. (323 aa)
	CIA1	Probable cytosolic iron-sulfur protein assembly protein 1; Essential component of the cytosolic iron-sulfur (Fe/S) protein assembly machinery. Required for the maturation of extramitochondrial Fe/S proteins. (445 aa)
	VDAG_10028	WD repeat domain phosphoinositide-interacting protein. (397 aa)
	VDAG_10111	Transport protein SEC13; Belongs to the WD repeat SEC13 family. (288 aa)
	PAC1	Nuclear distribution protein PAC1; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for nuclear migration during vegetative growth as well as development. Required for retrograde early endosome (EE) transport from the hyphal tip. Required for localization of dynein to the mitotic spindle poles. Recruits additional proteins to the dynein complex at SPBs; Belongs to the WD repeat LIS1/nudF family. (463 aa)
	VDAG_10442	U3 small nucleolar RNA-associated protein. (1042 aa)
	VDAG_10481	SNI2 protein. (969 aa)
	VDAG_00539	Phosphoinositide 3-kinase regulatory subunit 4. (1544 aa)
	VDAG_00553	Mitochondrial division protein. (683 aa)
	VDAG_00663	Peroxisomal targeting signal 2 receptor. (345 aa)
	VDAG_00773	Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. (853 aa)
	VDAG_00104	U3 small nucleolar RNA-associated protein. (559 aa)
	VDAG_00163	DNA excision repair protein ERCC-8. (479 aa)
	VDAG_00290	WD repeat-containing protein pop3. (318 aa)
	VDAG_00412	Nuclear pore complex subunit; Belongs to the WD repeat SEC13 family. (544 aa)
	VDAG_00415	WD_REPEATS_REGION domain-containing protein. (481 aa)
	VDAG_00963	WD repeat-containing protein. (318 aa)
	VDAG_00993	Sporulation protein. (968 aa)
	VDAG_01025	Chromatin assembly factor 1 subunit B. (719 aa)
	VDAG_01132	Pre-mRNA-processing factor 17. (531 aa)
	VDAG_01209	WD repeat-containing protein. (584 aa)
	VDAG_01235	Meiosis-specific APC/C activator protein AMA1. (713 aa)
	VDAG_01245	WD repeat-containing protein. (1034 aa)
	VDAG_01273	Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2. (1152 aa)
	VDAG_01283	WD repeat-containing protein. (544 aa)
	VDAG_01330	U3 small nucleolar RNA-associated protein. (822 aa)
	VDAG_01375	Ribosomal RNA-processing protein. (610 aa)
	VDAG_01383	Histone acetyltransferase type B subunit 2. (436 aa)
	VDAG_01426	Uncharacterized protein. (1116 aa)
	VDAG_01434	Cell division cycle protein cdt2. (712 aa)
	VDAG_01473	Periodic tryptophan protein. (861 aa)
	TIF34	Eukaryotic translation initiation factor 3 subunit I; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (333 aa)
	VDAG_01524	Actin-interacting protein. (610 aa)
	VDAG_02308	Coatomer subunit alpha; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. (1198 aa)
	VDAG_01651	F-box domain-containing protein. (605 aa)
	VDAG_01677	Transcription factor SPT8. (756 aa)
	VDAG_01678	Serine-threonine kinase receptor-associated protein. (357 aa)
	VDAG_01679	Ubiquitin homeostasis protein lub1. (771 aa)
	VDAG_01800	WD repeat-containing protein mip1. (1348 aa)
	VDAG_01848	Poly(A)+ RNA export protein. (358 aa)
	VDAG_01871	WD repeat-containing protein. (1517 aa)
	VDAG_01931	Mitotic checkpoint protein BUB3. (356 aa)
	VDAG_01950	U3 small nucleolar RNA-associated protein. (553 aa)
	VDAG_02726	Ribosome biogenesis protein Sqt1. (500 aa)
	VDAG_02759	WD repeat domain phosphoinositide-interacting protein. (377 aa)
	VDAG_02854	WD repeat-containing protein. (515 aa)
	VDAG_02487	LEC14B protein. (650 aa)
	VDAG_02667	WD repeat and FYVE domain-containing protein. (2613 aa)
	VDAG_03142	WD repeat-containing protein. (751 aa)
	VDAG_03178	Will die slowly. (594 aa)
	VDAG_03181	Actin-related protein 2/3 complex subunit; Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks; Belongs to the WD repeat ARPC1 family. (363 aa)
	VDAG_03229	Cytoplasmic dynein 1 intermediate chain 1. (254 aa)
	VDAG_03243	Periodic tryptophan protein. (535 aa)
	VDAG_03775	F-box/WD repeat-containing protein 1A. (1079 aa)
	VDAG_03944	WD repeat-containing protein. (1165 aa)
	VDAG_04224	Uncharacterized protein. (1202 aa)
	VDAG_04263	DOM34-interacting protein. (1081 aa)
	TRM82	tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit TRM82; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family. (549 aa)
	VDAG_04431	U4/U6 small nuclear ribonucleoprotein Prp4. (515 aa)
	ERB1	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (766 aa)
	VDAG_04131	Peptidyl-prolyl cis-trans isomerase cyp15. (620 aa)
	VDAG_04149	NACHT and WD domain-containing protein. (1499 aa)
	VDAG_04159	U3 small nucleolar RNA-associated protein. (598 aa)
	VDAG_04583	WD repeat-containing protein srw1. (619 aa)
	VDAG_04649	Transcription initiation factor TFIID subunit 5. (759 aa)
	VDAG_05417	Protein HIR; Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle; Belongs to the WD repeat HIR1 family. (994 aa)
	VDAG_05541	WD repeat-containing protein. (634 aa)
	VDAG_05549	Catabolite repression protein creC. (611 aa)
	VDAG_05616	WD repeat-containing protein. (356 aa)
	VDAG_05318	WD repeat-containing protein. (1033 aa)
	VDAG_05330	Cell division control protein. (1030 aa)

Your Current Organism:

Verticillium dahliae

NCBI taxonomy Id: 498257
Other names: V. dahliae VdLs.17, Verticillium dahliae VdLs.17

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CIA1	VDAG_01132	G2XIN9	G2WTK9	Probable cytosolic iron-sulfur protein assembly protein 1; Essential component of the cytosolic iron-sulfur (Fe/S) protein assembly machinery. Required for the maturation of extramitochondrial Fe/S proteins.	Pre-mRNA-processing factor 17.	0.419
CIA1	VDAG_07036	G2XIN9	G2XAD3	Probable cytosolic iron-sulfur protein assembly protein 1; Essential component of the cytosolic iron-sulfur (Fe/S) protein assembly machinery. Required for the maturation of extramitochondrial Fe/S proteins.	SOF1 protein.	0.429
ERB1	TRM82	G2X2S1	G2X1W9	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit TRM82; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family.	0.773
ERB1	VDAG_00104	G2X2S1	G2WRC1	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	U3 small nucleolar RNA-associated protein.	0.469
ERB1	VDAG_00993	G2X2S1	G2WT70	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Sporulation protein.	0.815
ERB1	VDAG_01235	G2X2S1	G2WTW2	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Meiosis-specific APC/C activator protein AMA1.	0.530
ERB1	VDAG_01330	G2X2S1	G2WU57	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	U3 small nucleolar RNA-associated protein.	0.877
ERB1	VDAG_01375	G2X2S1	G2WUA2	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Ribosomal RNA-processing protein.	0.773
ERB1	VDAG_01473	G2X2S1	G2WUK0	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Periodic tryptophan protein.	0.912
ERB1	VDAG_01950	G2X2S1	G2WWG4	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	U3 small nucleolar RNA-associated protein.	0.915
ERB1	VDAG_02726	G2X2S1	G2WWU7	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Ribosome biogenesis protein Sqt1.	0.506
ERB1	VDAG_02854	G2X2S1	G2WX75	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	WD repeat-containing protein.	0.907
ERB1	VDAG_03243	G2X2S1	G2WZ01	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Periodic tryptophan protein.	0.875
ERB1	VDAG_04159	G2X2S1	G2X2W5	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	U3 small nucleolar RNA-associated protein.	0.963
ERB1	VDAG_04263	G2X2S1	G2X1T9	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	DOM34-interacting protein.	0.973
ERB1	VDAG_04583	G2X2S1	G2X3J6	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	WD repeat-containing protein srw1.	0.530
ERB1	VDAG_04649	G2X2S1	G2X3R2	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Transcription initiation factor TFIID subunit 5.	0.530
ERB1	VDAG_05541	G2X2S1	G2X5N6	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	WD repeat-containing protein.	0.797
ERB1	VDAG_05549	G2X2S1	G2X5P4	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Catabolite repression protein creC.	0.530
ERB1	VDAG_06042	G2X2S1	G2X8A1	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	U3 small nucleolar RNA-associated protein.	0.776