(22 nodes) Cytochrome P450, E-class, group IV network (Verticillium dahliae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDAG_01659	Ent-kaurene oxidase; Belongs to the cytochrome P450 family. (302 aa)
	VDAG_01173	Cytochrome P450; Belongs to the cytochrome P450 family. (539 aa)
	VDAG_10486	Cytochrome P450 monooxygenase; Belongs to the cytochrome P450 family. (550 aa)
	VDAG_09541	Benzoate 4-monooxygenase cytochrome P450; Belongs to the cytochrome P450 family. (432 aa)
	VDAG_08476	Cytochrome P450 61; Belongs to the cytochrome P450 family. (533 aa)
	VDAG_07843	Ent-kaurene oxidase; Belongs to the cytochrome P450 family. (520 aa)
	VDAG_07777	Uncharacterized protein; Belongs to the cytochrome P450 family. (495 aa)
	VDAG_07619	Uncharacterized protein; Belongs to the cytochrome P450 family. (522 aa)
	VDAG_07713	Bifunctional P-450:NADPH-P450 reductase; Belongs to the cytochrome P450 family. (425 aa)
	VDAG_06023	Isotrichodermin C-15 hydroxylase; Belongs to the cytochrome P450 family. (524 aa)
	VDAG_05638	Trichodiene oxygenase; Belongs to the cytochrome P450 family. (537 aa)
	VDAG_05456	Pisatin demethylase; Belongs to the cytochrome P450 family. (497 aa)
	VDAG_05430	Cytochrome P450; Belongs to the cytochrome P450 family. (560 aa)
	VDAG_01662	Ent-kaurene oxidase; Belongs to the cytochrome P450 family. (528 aa)
	VDAG_05420	Ent-kaurene oxidase; Belongs to the cytochrome P450 family. (502 aa)
	VDAG_01663	Ent-kaurene oxidase; Belongs to the cytochrome P450 family. (379 aa)
	VDAG_03370	Uncharacterized protein; Belongs to the cytochrome P450 family. (517 aa)
	VDAG_03560	Pisatin demethylase; Belongs to the cytochrome P450 family. (496 aa)
	VDAG_04380	Cytochrome P450 51; Belongs to the cytochrome P450 family. (444 aa)
	VDAG_04680	Ent-kaurene oxidase; Belongs to the cytochrome P450 family. (515 aa)
	VDAG_04715	Cytochrome P450; Belongs to the cytochrome P450 family. (573 aa)
	VDAG_01661	Uncharacterized protein; Belongs to the cytochrome P450 family. (336 aa)

Your Current Organism:

Verticillium dahliae

NCBI taxonomy Id: 498257
Other names: V. dahliae VdLs.17, Verticillium dahliae VdLs.17

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDAG_01661	VDAG_08476	G2WVM5	G2XE94	Uncharacterized protein; Belongs to the cytochrome P450 family.	Cytochrome P450 61; Belongs to the cytochrome P450 family.	0.448
VDAG_04380	VDAG_08476	G2X256	G2XE94	Cytochrome P450 51; Belongs to the cytochrome P450 family.	Cytochrome P450 61; Belongs to the cytochrome P450 family.	0.501
VDAG_07713	VDAG_09541	G2XBS7	G2XHA9	Bifunctional P-450:NADPH-P450 reductase; Belongs to the cytochrome P450 family.	Benzoate 4-monooxygenase cytochrome P450; Belongs to the cytochrome P450 family.	0.427
VDAG_08476	VDAG_01661	G2XE94	G2WVM5	Cytochrome P450 61; Belongs to the cytochrome P450 family.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.448
VDAG_08476	VDAG_04380	G2XE94	G2X256	Cytochrome P450 61; Belongs to the cytochrome P450 family.	Cytochrome P450 51; Belongs to the cytochrome P450 family.	0.501
VDAG_09541	VDAG_07713	G2XHA9	G2XBS7	Benzoate 4-monooxygenase cytochrome P450; Belongs to the cytochrome P450 family.	Bifunctional P-450:NADPH-P450 reductase; Belongs to the cytochrome P450 family.	0.427