(42 nodes) ATPase, AAA-type, core network (Verticillium dahliae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDAG_08125	AAA domain-containing protein. (1002 aa)
	VDAG_07837	26S protease regulatory subunit 6A; Belongs to the AAA ATPase family. (463 aa)
	VDAG_07658	AAA domain-containing protein. (715 aa)
	VDAG_07639	Replication factor C subunit 3. (393 aa)
	VDAG_00862	26S protease regulatory subunit 6B; Belongs to the AAA ATPase family. (421 aa)
	VDAG_00909	Ribosome biogenesis ATPase RIX7. (784 aa)
	VDAG_01279	Mitochondrial chaperone BCS1; Belongs to the AAA ATPase family. (637 aa)
	VDAG_02171	Vacuolar protein sorting-associated protein; Belongs to the AAA ATPase family. (430 aa)
	VDAG_01940	AFG2 protein. (756 aa)
	VDAG_02028	Cell division protease ftsH. (755 aa)
	VDAG_04365	Heat shock protein; Belongs to the ClpA/ClpB family. (797 aa)
	VDAG_04449	26S protease regulatory subunit 7; Belongs to the AAA ATPase family. (439 aa)
	VDAG_02425	Mitochondrial chaperone BCS1; Belongs to the AAA ATPase family. (409 aa)
	VDAG_04192	Replication factor C subunit 2. (380 aa)
	VDAG_04748	26S protease regulatory subunit 4; Belongs to the AAA ATPase family. (434 aa)
	VDAG_05219	Mitochondrial chaperone BCS1. (405 aa)
	VDAG_05829	Heat shock protein HSP98; Belongs to the ClpA/ClpB family. (921 aa)
	VDAG_06537	ATPase family AAA domain-containing protein. (1653 aa)
	VDAG_07127	AAA ATPase central domain-containing protein. (493 aa)
	VDAG_07155	26S protease regulatory subunit 8; Belongs to the AAA ATPase family. (389 aa)
	VDAG_07060	Replication factor C subunit 1. (1040 aa)
	VDAG_10016	ATP-dependent Clp protease ATP-binding subunit clpX. (583 aa)
	VDAG_07086	Vesicular-fusion protein SEC18. (853 aa)
	VDAG_07252	Mitochondrial chaperone BCS1; Belongs to the AAA ATPase family. (492 aa)
	VDAG_10020	ATPase family AAA domain-containing protein 1-B. (1032 aa)
	VDAG_04271	26S protease subunit RPT4; Belongs to the AAA ATPase family. (373 aa)
	VDAG_04239	Peroxisome biosynthesis protein PAS1. (1211 aa)
	VDAG_03822	ATPase WRNIP1. (574 aa)
	VDAG_03339	AAA domain-containing protein. (767 aa)
	VDAG_03113	Peroxisomal biogenesis factor 6. (1369 aa)
	VDAG_09598	AAA domain-containing protein. (1197 aa)
	VDAG_09424	SAP1; Belongs to the AAA ATPase family. (784 aa)
	VDAG_09036	ATPase family AAA domain-containing protein; Belongs to the AAA ATPase family. (409 aa)
	PIM1	Lon protease homolog, mitochondrial; ATP-dependent serine protease that mediates the selective degradation of misfolded, unassembled or oxidatively damaged polypeptides as well as certain short-lived regulatory proteins in the mitochondrial matrix. May also have a chaperone function in the assembly of inner membrane protein complexes. Participates in the regulation of mitochondrial gene expression and in the maintenance of the integrity of the mitochondrial genome. Binds to mitochondrial DNA in a site-specific manner; Belongs to the peptidase S16 family. (1110 aa)
	VDAG_08520	Paraplegin. (906 aa)
	VDAG_10092	Mitochondrial chaperone BCS1; Belongs to the AAA ATPase family. (624 aa)
	VDAG_10250	Chromosome transmission fidelity protein. (947 aa)
	VDAG_10261	Lon protease homolog 2, peroxisomal; ATP-dependent serine protease that mediates the selective degradation of misfolded and unassembled polypeptides in the peroxisomal matrix. Necessary for type 2 peroxisome targeting signal (PTS2)-containing protein processing and facilitates peroxisome matrix protein import; Belongs to the peptidase S16 family. ECO:0000256\|PROSITE-. (937 aa)
	VDAG_10298	AAA domain-containing protein. (859 aa)
	VDAG_10417	Cell division cycle protein. (816 aa)
	VDAG_08469	Replication factor C subunit 4. (361 aa)
	VDAG_07853	Mitochondrial chaperone BCS1. (470 aa)

Your Current Organism:

Verticillium dahliae

NCBI taxonomy Id: 498257
Other names: V. dahliae VdLs.17, Verticillium dahliae VdLs.17

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PIM1	VDAG_02028	G2XFZ8	G2WWP2	Lon protease homolog, mitochondrial; ATP-dependent serine protease that mediates the selective degradation of misfolded, unassembled or oxidatively damaged polypeptides as well as certain short-lived regulatory proteins in the mitochondrial matrix. May also have a chaperone function in the assembly of inner membrane protein complexes. Participates in the regulation of mitochondrial gene expression and in the maintenance of the integrity of the mitochondrial genome. Binds to mitochondrial DNA in a site-specific manner; Belongs to the peptidase S16 family.	Cell division protease ftsH.	0.636
PIM1	VDAG_04365	G2XFZ8	G2X241	Lon protease homolog, mitochondrial; ATP-dependent serine protease that mediates the selective degradation of misfolded, unassembled or oxidatively damaged polypeptides as well as certain short-lived regulatory proteins in the mitochondrial matrix. May also have a chaperone function in the assembly of inner membrane protein complexes. Participates in the regulation of mitochondrial gene expression and in the maintenance of the integrity of the mitochondrial genome. Binds to mitochondrial DNA in a site-specific manner; Belongs to the peptidase S16 family.	Heat shock protein; Belongs to the ClpA/ClpB family.	0.595
PIM1	VDAG_05829	G2XFZ8	G2X6P7	Lon protease homolog, mitochondrial; ATP-dependent serine protease that mediates the selective degradation of misfolded, unassembled or oxidatively damaged polypeptides as well as certain short-lived regulatory proteins in the mitochondrial matrix. May also have a chaperone function in the assembly of inner membrane protein complexes. Participates in the regulation of mitochondrial gene expression and in the maintenance of the integrity of the mitochondrial genome. Binds to mitochondrial DNA in a site-specific manner; Belongs to the peptidase S16 family.	Heat shock protein HSP98; Belongs to the ClpA/ClpB family.	0.598
PIM1	VDAG_08520	G2XFZ8	G2XED5	Lon protease homolog, mitochondrial; ATP-dependent serine protease that mediates the selective degradation of misfolded, unassembled or oxidatively damaged polypeptides as well as certain short-lived regulatory proteins in the mitochondrial matrix. May also have a chaperone function in the assembly of inner membrane protein complexes. Participates in the regulation of mitochondrial gene expression and in the maintenance of the integrity of the mitochondrial genome. Binds to mitochondrial DNA in a site-specific manner; Belongs to the peptidase S16 family.	Paraplegin.	0.649
PIM1	VDAG_10016	G2XFZ8	G2XIN4	Lon protease homolog, mitochondrial; ATP-dependent serine protease that mediates the selective degradation of misfolded, unassembled or oxidatively damaged polypeptides as well as certain short-lived regulatory proteins in the mitochondrial matrix. May also have a chaperone function in the assembly of inner membrane protein complexes. Participates in the regulation of mitochondrial gene expression and in the maintenance of the integrity of the mitochondrial genome. Binds to mitochondrial DNA in a site-specific manner; Belongs to the peptidase S16 family.	ATP-dependent Clp protease ATP-binding subunit clpX.	0.693
VDAG_00862	VDAG_01940	G2WST1	G2WWF4	26S protease regulatory subunit 6B; Belongs to the AAA ATPase family.	AFG2 protein.	0.580
VDAG_00862	VDAG_03339	G2WST1	G2WZ97	26S protease regulatory subunit 6B; Belongs to the AAA ATPase family.	AAA domain-containing protein.	0.976
VDAG_00862	VDAG_04271	G2WST1	G2X1U7	26S protease regulatory subunit 6B; Belongs to the AAA ATPase family.	26S protease subunit RPT4; Belongs to the AAA ATPase family.	0.999
VDAG_00862	VDAG_04449	G2WST1	G2X2C5	26S protease regulatory subunit 6B; Belongs to the AAA ATPase family.	26S protease regulatory subunit 7; Belongs to the AAA ATPase family.	0.999
VDAG_00862	VDAG_04748	G2WST1	G2X411	26S protease regulatory subunit 6B; Belongs to the AAA ATPase family.	26S protease regulatory subunit 4; Belongs to the AAA ATPase family.	0.999
VDAG_00862	VDAG_06537	G2WST1	G2X7S9	26S protease regulatory subunit 6B; Belongs to the AAA ATPase family.	ATPase family AAA domain-containing protein.	0.550
VDAG_00862	VDAG_07127	G2WST1	G2X9T2	26S protease regulatory subunit 6B; Belongs to the AAA ATPase family.	AAA ATPase central domain-containing protein.	0.533
VDAG_00862	VDAG_07155	G2WST1	G2X9W0	26S protease regulatory subunit 6B; Belongs to the AAA ATPase family.	26S protease regulatory subunit 8; Belongs to the AAA ATPase family.	0.999
VDAG_00862	VDAG_07837	G2WST1	G2XCF5	26S protease regulatory subunit 6B; Belongs to the AAA ATPase family.	26S protease regulatory subunit 6A; Belongs to the AAA ATPase family.	0.999
VDAG_00862	VDAG_08125	G2WST1	G2XD93	26S protease regulatory subunit 6B; Belongs to the AAA ATPase family.	AAA domain-containing protein.	0.520
VDAG_00862	VDAG_10417	G2WST1	G2XJT5	26S protease regulatory subunit 6B; Belongs to the AAA ATPase family.	Cell division cycle protein.	0.558
VDAG_01279	VDAG_10016	G2WU06	G2XIN4	Mitochondrial chaperone BCS1; Belongs to the AAA ATPase family.	ATP-dependent Clp protease ATP-binding subunit clpX.	0.475
VDAG_01940	VDAG_00862	G2WWF4	G2WST1	AFG2 protein.	26S protease regulatory subunit 6B; Belongs to the AAA ATPase family.	0.580
VDAG_01940	VDAG_03339	G2WWF4	G2WZ97	AFG2 protein.	AAA domain-containing protein.	0.488
VDAG_01940	VDAG_04192	G2WWF4	G2X2Z9	AFG2 protein.	Replication factor C subunit 2.	0.665