69 items (Verticillium dahliae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDAG_01644	Pre-mRNA-splicing factor slt-11. (381 aa)
	VDAG_10424	U1 small nuclear ribonucleoprotein A. (246 aa)
	VDAG_10332	Uncharacterized protein. (706 aa)
	VDAG_10099	Pre-mRNA splicing factor. (322 aa)
	VDAG_09437	RNP domain-containing protein. (458 aa)
	VDAG_08924	Peptidyl-prolyl cis-trans isomerase E. (153 aa)
	VDAG_08864	RRM domain-containing protein. (256 aa)
	VDAG_08466	Pre-mRNA-splicing factor CWC2. (411 aa)
	VDAG_08454	Splicing factor 3B subunit 4. (498 aa)
	VDAG_08052	Pre-rRNA-processing protein ESF2. (317 aa)
	VDAG_07628	RNA-binding post-transcriptional regulator cip2. (601 aa)
	VDAG_07347	Vip1. (276 aa)
	VDAG_07072	Uncharacterized protein. (256 aa)
	VDAG_07019	RNA-binding protein rsd1. (570 aa)
	VDAG_06981	Ribosomal biogenesis protein Gar2. (386 aa)
	VDAG_06908	RNA12 protein. (850 aa)
	VDAG_06693	Uncharacterized protein. (1082 aa)
	VDAG_06680	RRM domain-containing protein. (209 aa)
	VDAG_06648	Nucleolysin TIA-1. (489 aa)
	VDAG_06364	RNA recognition motif containing protein. (810 aa)
	VDAG_06323	Nucleolar protein. (785 aa)
	VDAG_06306	60S ribosomal protein L23a. (157 aa)
	VDAG_05931	NTF2 domain-containing protein. (446 aa)
	VDAG_05893	U1 small nuclear ribonucleoprotein. (416 aa)
	VDAG_05874	Nuclear cap-binding protein subunit 2. (186 aa)
	VDAG_05840	Pumilio domain-containing protein. (1160 aa)
	VDAG_05774	RRM domain-containing protein. (424 aa)
	VDAG_05474	General negative regulator of transcription subunit 4. (1611 aa)
	VDAG_04802	Uncharacterized protein. (598 aa)
	VDAG_04577	RNA-binding protein. (344 aa)
	VDAG_04564	Uncharacterized protein. (287 aa)
	VDAG_04215	RNA binding domain-containing protein. (329 aa)
	VDAG_04200	Splicing factor U2AF 23 kDa subunit. (210 aa)
	VDAG_04412	RNA-binding protein. (383 aa)
	VDAG_04386	Gar2. (485 aa)
	VDAG_04370	RRM domain-containing protein. (440 aa)
	VDAG_04254	RNA-binding protein. (306 aa)
	VDAG_03945	Rpb7-binding protein seb1. (703 aa)
	VDAG_03069	Pre-mRNA branch site protein p14. (117 aa)
	VDAG_03063	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (589 aa)
	VDAG_03303	Nucleolar protein. (550 aa)
	VDAG_03291	RRM domain-containing protein. (149 aa)
	VDAG_03252	Glycine-rich RNA-binding protein. (175 aa)
	VDAG_03182	U2 small nuclear ribonucleoprotein B. (194 aa)
	VDAG_02678	Uncharacterized protein. (455 aa)
	VDAG_02606	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. (509 aa)
	VDAG_02565	RNA binding protein. (508 aa)
	VDAG_02485	RRM domain-containing protein. (361 aa)
	VDAG_02473	RNA binding protein. (307 aa)
	VDAG_02449	RRM domain-containing protein. (597 aa)
	PRT1	Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family. (745 aa)
	VDAG_02878	RNA-binding post-transcriptional regulator csx1. (418 aa)
	VDAG_02758	RNA-binding motif protein. (333 aa)
	VDAG_02725	RRM domain-containing protein. (309 aa)
	VDAG_02020	RRM domain-containing protein. (673 aa)
	VDAG_01707	Rna-binding protein. (800 aa)
	VDAG_01381	Asparagine-rich protein. (628 aa)
	VDAG_01045	RNA-binding protein 8A. (150 aa)
	VDAG_01001	Multiple RNA-binding domain-containing protein. (866 aa)
	VDAG_01629	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (759 aa)
	TIF35	Eukaryotic translation initiation factor 3 subunit G; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. This subunit can bind 18S rRNA. (297 aa)
	VDAG_00345	Glycine-rich protein. (375 aa)
	VDAG_00263	Uncharacterized protein. (389 aa)
	VDAG_00222	G-patch domain-containing protein. (507 aa)
	VDAG_00125	Nuclear polyadenylated RNA-binding protein. (484 aa)
	VDAG_00074	Polyadenylate-binding protein. (205 aa)
	VDAG_00738	Lupus La protein. (415 aa)
	VDAG_00508	Uncharacterized protein. (186 aa)
	VDAG_00462	CCCH zinc finger and RRM domain-containing protein. (664 aa)

Your Current Organism:

Verticillium dahliae

NCBI taxonomy Id: 498257
Other names: V. dahliae VdLs.17, Verticillium dahliae VdLs.17

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PRT1	TIF35	G2WXI8	G2WSA2	Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family.	Eukaryotic translation initiation factor 3 subunit G; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. This subunit can bind 18S rRNA.	0.997
PRT1	VDAG_01629	G2WXI8	G2WSN3	Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.715
PRT1	VDAG_03252	G2WXI8	G2WZ10	Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family.	Glycine-rich RNA-binding protein.	0.414
PRT1	VDAG_05931	G2WXI8	G2X6Z9	Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family.	NTF2 domain-containing protein.	0.567
TIF35	PRT1	G2WSA2	G2WXI8	Eukaryotic translation initiation factor 3 subunit G; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. This subunit can bind 18S rRNA.	Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family.	0.997
VDAG_00074	VDAG_00462	G2WR91	G2WQ20	Polyadenylate-binding protein.	CCCH zinc finger and RRM domain-containing protein.	0.687
VDAG_00074	VDAG_01045	G2WR91	G2WTC2	Polyadenylate-binding protein.	RNA-binding protein 8A.	0.803
VDAG_00074	VDAG_01629	G2WR91	G2WSN3	Polyadenylate-binding protein.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.846
VDAG_00074	VDAG_03063	G2WR91	G2X040	Polyadenylate-binding protein.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.952
VDAG_00074	VDAG_03291	G2WR91	G2WZ49	Polyadenylate-binding protein.	RRM domain-containing protein.	0.690
VDAG_00074	VDAG_04200	G2WR91	G2X306	Polyadenylate-binding protein.	Splicing factor U2AF 23 kDa subunit.	0.768
VDAG_00074	VDAG_04215	G2WR91	G2X321	Polyadenylate-binding protein.	RNA binding domain-containing protein.	0.708
VDAG_00074	VDAG_04254	G2WR91	G2X1T0	Polyadenylate-binding protein.	RNA-binding protein.	0.883
VDAG_00074	VDAG_04412	G2WR91	G2X288	Polyadenylate-binding protein.	RNA-binding protein.	0.404
VDAG_00074	VDAG_04577	G2WR91	G2X3J0	Polyadenylate-binding protein.	RNA-binding protein.	0.505
VDAG_00074	VDAG_05874	G2WR91	G2X6U2	Polyadenylate-binding protein.	Nuclear cap-binding protein subunit 2.	0.968
VDAG_00074	VDAG_05893	G2WR91	G2X6W1	Polyadenylate-binding protein.	U1 small nuclear ribonucleoprotein.	0.628
VDAG_00074	VDAG_06680	G2WR91	G2X948	Polyadenylate-binding protein.	RRM domain-containing protein.	0.582
VDAG_00074	VDAG_07019	G2WR91	G2XAB6	Polyadenylate-binding protein.	RNA-binding protein rsd1.	0.428
VDAG_00074	VDAG_07628	G2WR91	G2XBU6	Polyadenylate-binding protein.	RNA-binding post-transcriptional regulator cip2.	0.645