18 items (Verticillium dahliae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDAG_00461	Elongation factor 2. (844 aa)
	VDAG_00604	DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double- strand breaks. (1743 aa)
	VDAG_00969	U5 small nuclear ribonucleoprotein component. (983 aa)
	MEF1	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. (796 aa)
	VDAG_01850	Homoserine kinase. (355 aa)
	VDAG_03557	Galactokinase. (532 aa)
	VDAG_03794	Diphosphomevalonate decarboxylase; Belongs to the diphosphomevalonate decarboxylase family. (376 aa)
	VDAG_05679	40S ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family. (143 aa)
	VDAG_06045	40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family. (261 aa)
	VDAG_06894	37S ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family. (494 aa)
	VDAG_08056	Phosphomevalonate kinase; Belongs to the GHMP kinase family. Mevalonate kinase subfamily. (439 aa)
	VDAG_08355	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. (336 aa)
	VDAG_08805	DNA mismatch repair protein mutL. (992 aa)
	PIM1	Lon protease homolog, mitochondrial; ATP-dependent serine protease that mediates the selective degradation of misfolded, unassembled or oxidatively damaged polypeptides as well as certain short-lived regulatory proteins in the mitochondrial matrix. May also have a chaperone function in the assembly of inner membrane protein complexes. Participates in the regulation of mitochondrial gene expression and in the maintenance of the integrity of the mitochondrial genome. Binds to mitochondrial DNA in a site-specific manner; Belongs to the peptidase S16 family. (1110 aa)
	VDAG_09041	DNA mismatch repair protein PMS1. (1035 aa)
	VDAG_09975	Mevalonate kinase; Catalyzes the phosphorylation of mevalonate to mevalonate 5- phosphate, a key step in isoprenoid and cholesterol biosynthesis. Belongs to the GHMP kinase family. Mevalonate kinase subfamily. (500 aa)
	VDAG_10261	Lon protease homolog 2, peroxisomal; ATP-dependent serine protease that mediates the selective degradation of misfolded and unassembled polypeptides in the peroxisomal matrix. Necessary for type 2 peroxisome targeting signal (PTS2)-containing protein processing and facilitates peroxisome matrix protein import; Belongs to the peptidase S16 family. ECO:0000256\|PROSITE-. (937 aa)
	VDAG_10264	DNA mismatch repair protein hexB. (704 aa)

Your Current Organism:

Verticillium dahliae

NCBI taxonomy Id: 498257
Other names: V. dahliae VdLs.17, Verticillium dahliae VdLs.17

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MEF1	VDAG_05679	G2WTJ4	G2X697	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.	40S ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family.	0.652
MEF1	VDAG_06045	G2WTJ4	G2X8A4	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.	40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.	0.883
MEF1	VDAG_06894	G2WTJ4	G2X9Z1	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.	37S ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.	0.757
MEF1	VDAG_08355	G2WTJ4	G2XDX3	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.860
VDAG_00461	VDAG_00604	G2WQ19	G2WQG2	Elongation factor 2.	DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double- strand breaks.	0.655
VDAG_00461	VDAG_05679	G2WQ19	G2X697	Elongation factor 2.	40S ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family.	0.997
VDAG_00461	VDAG_06045	G2WQ19	G2X8A4	Elongation factor 2.	40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.	0.999
VDAG_00461	VDAG_06894	G2WQ19	G2X9Z1	Elongation factor 2.	37S ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.	0.757
VDAG_00461	VDAG_08355	G2WQ19	G2XDX3	Elongation factor 2.	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.860
VDAG_00604	VDAG_00461	G2WQG2	G2WQ19	DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double- strand breaks.	Elongation factor 2.	0.655
VDAG_00604	VDAG_06045	G2WQG2	G2X8A4	DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double- strand breaks.	40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.	0.467
VDAG_00604	VDAG_06894	G2WQG2	G2X9Z1	DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double- strand breaks.	37S ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.	0.464
VDAG_00604	VDAG_08355	G2WQG2	G2XDX3	DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double- strand breaks.	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.622
VDAG_00604	VDAG_10264	G2WQG2	G2XJD2	DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double- strand breaks.	DNA mismatch repair protein hexB.	0.493
VDAG_00969	VDAG_05679	G2WT46	G2X697	U5 small nuclear ribonucleoprotein component.	40S ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family.	0.676
VDAG_00969	VDAG_06045	G2WT46	G2X8A4	U5 small nuclear ribonucleoprotein component.	40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.	0.757
VDAG_00969	VDAG_06894	G2WT46	G2X9Z1	U5 small nuclear ribonucleoprotein component.	37S ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.	0.757
VDAG_00969	VDAG_08355	G2WT46	G2XDX3	U5 small nuclear ribonucleoprotein component.	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.860
VDAG_01850	VDAG_03557	G2WW64	G2WZW5	Homoserine kinase.	Galactokinase.	0.614
VDAG_01850	VDAG_08056	G2WW64	G2XD24	Homoserine kinase.	Phosphomevalonate kinase; Belongs to the GHMP kinase family. Mevalonate kinase subfamily.	0.454