(10 nodes) Ribosomal protein L2, domain 2 network (Verticillium dahliae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDAG_05940	60S ribosomal protein L2. (254 aa)
	VDAG_01749	Woronin body major protein. (197 aa)
	VDAG_01978	60S ribosomal protein L26-1. (136 aa)
	VDAG_02507	60S ribosomal protein L14-B. (147 aa)
	VDAG_02543	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family. (262 aa)
	VDAG_04364	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family. (202 aa)
	VDAG_01384	5'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins. (1404 aa)
	VDAG_08839	50S ribosomal protein L2. (392 aa)
	VDAG_00362	Eukaryotic translation initiation factor 5A. (161 aa)
	VDAG_01211	Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene. (1062 aa)

Your Current Organism:

Verticillium dahliae

NCBI taxonomy Id: 498257
Other names: V. dahliae VdLs.17, Verticillium dahliae VdLs.17

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDAG_00362	VDAG_01978	G2WS29	G2WWJ2	Eukaryotic translation initiation factor 5A.	60S ribosomal protein L26-1.	0.969
VDAG_00362	VDAG_02507	G2WS29	G2WY25	Eukaryotic translation initiation factor 5A.	60S ribosomal protein L14-B.	0.985
VDAG_00362	VDAG_02543	G2WS29	G2WY61	Eukaryotic translation initiation factor 5A.	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	0.980
VDAG_00362	VDAG_04364	G2WS29	G2X240	Eukaryotic translation initiation factor 5A.	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family.	0.974
VDAG_00362	VDAG_05940	G2WS29	G2X708	Eukaryotic translation initiation factor 5A.	60S ribosomal protein L2.	0.966
VDAG_00362	VDAG_08839	G2WS29	G2XFA7	Eukaryotic translation initiation factor 5A.	50S ribosomal protein L2.	0.827
VDAG_01384	VDAG_01978	G2WUB1	G2WWJ2	5'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins.	60S ribosomal protein L26-1.	0.486
VDAG_01384	VDAG_02507	G2WUB1	G2WY25	5'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins.	60S ribosomal protein L14-B.	0.451
VDAG_01384	VDAG_02543	G2WUB1	G2WY61	5'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins.	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	0.465
VDAG_01384	VDAG_05940	G2WUB1	G2X708	5'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins.	60S ribosomal protein L2.	0.461
VDAG_01749	VDAG_01978	G2WVW3	G2WWJ2	Woronin body major protein.	60S ribosomal protein L26-1.	0.924
VDAG_01749	VDAG_02507	G2WVW3	G2WY25	Woronin body major protein.	60S ribosomal protein L14-B.	0.930
VDAG_01749	VDAG_02543	G2WVW3	G2WY61	Woronin body major protein.	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	0.953
VDAG_01749	VDAG_04364	G2WVW3	G2X240	Woronin body major protein.	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family.	0.922
VDAG_01749	VDAG_05940	G2WVW3	G2X708	Woronin body major protein.	60S ribosomal protein L2.	0.902
VDAG_01749	VDAG_08839	G2WVW3	G2XFA7	Woronin body major protein.	50S ribosomal protein L2.	0.827
VDAG_01978	VDAG_00362	G2WWJ2	G2WS29	60S ribosomal protein L26-1.	Eukaryotic translation initiation factor 5A.	0.969
VDAG_01978	VDAG_01384	G2WWJ2	G2WUB1	60S ribosomal protein L26-1.	5'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins.	0.486
VDAG_01978	VDAG_01749	G2WWJ2	G2WVW3	60S ribosomal protein L26-1.	Woronin body major protein.	0.924
VDAG_01978	VDAG_02507	G2WWJ2	G2WY25	60S ribosomal protein L26-1.	60S ribosomal protein L14-B.	0.999