(30 nodes) AMP-binding, conserved site network (Verticillium dahliae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDAG_03964	Surfactin synthetase subunit 3. (1932 aa)
	VDAG_03963	Short-chain-fatty-acid-CoA ligase. (579 aa)
	VDAG_03940	Long-chain-fatty-acid-CoA ligase. (705 aa)
	VDAG_03390	4-coumarate-CoA ligase. (560 aa)
	VDAG_02911	Surfactin synthetase subunit 3. (1060 aa)
	VDAG_02819	Short-chain-fatty-acid-CoA ligase. (596 aa)
	VDAG_01821	Luciferin 4-monooxygenase. (578 aa)
	VDAG_02144	L-aminoadipate-semialdehyde dehydrogenase. (1006 aa)
	VDAG_02119	4-coumarate-CoA ligase. (329 aa)
	VDAG_01324	Acetoacetyl-coenzyme A synthetase. (668 aa)
	VDAG_01176	4-coumarate-CoA ligase. (558 aa)
	VDAG_00401	Long-chain-fatty-acid-CoA ligase. (700 aa)
	VDAG_00221	Peroxisomal-coenzyme A synthetase. (517 aa)
	VDAG_09654	Carrier domain-containing protein. (1076 aa)
	VDAG_09589	Acetoacetyl-coenzyme A synthetase. (695 aa)
	VDAG_09802	Transferase family protein. (1521 aa)
	VDAG_09763	Enterobactin synthetase component F. (1284 aa)
	VDAG_09533	Carrier domain-containing protein. (942 aa)
	VDAG_08662	4-coumarate-CoA ligase. (636 aa)
	VDAG_08654	Acetyl-coenzyme A synthetase. (697 aa)
	VDAG_08277	Acyl-coenzyme A synthetase ACSM5. (543 aa)
	VDAG_08188	D-alanine-poly(Phosphoribitol) ligase subunit 1. (1334 aa)
	VDAG_07711	Nonribosomal peptide synthetase. (988 aa)
	VDAG_07324	4-coumarate-CoA ligase. (523 aa)
	VDAG_07057	Acetyl-coenzyme A synthetase. (660 aa)
	VDAG_07112	L-aminoadipate-semialdehyde dehydrogenase large subunit. (1153 aa)
	VDAG_06757	Fatty acid transporter protein. (636 aa)
	VDAG_06329	2-succinylbenzoate-CoA ligase. (580 aa)
	VDAG_05314	N-(5-amino-5-carboxypentanoyl)-L-cysteinyl-D-valine synthase. (4757 aa)
	VDAG_05523	Long-chain-fatty-acid-CoA ligase. (692 aa)

Your Current Organism:

Verticillium dahliae

NCBI taxonomy Id: 498257
Other names: V. dahliae VdLs.17, Verticillium dahliae VdLs.17

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDAG_00221	VDAG_01324	G2WRN8	G2WU51	Peroxisomal-coenzyme A synthetase.	Acetoacetyl-coenzyme A synthetase.	0.479
VDAG_00221	VDAG_02911	G2WRN8	G2WXD2	Peroxisomal-coenzyme A synthetase.	Surfactin synthetase subunit 3.	0.404
VDAG_00221	VDAG_03964	G2WRN8	G2X135	Peroxisomal-coenzyme A synthetase.	Surfactin synthetase subunit 3.	0.404
VDAG_00221	VDAG_05314	G2WRN8	G2X5Z8	Peroxisomal-coenzyme A synthetase.	N-(5-amino-5-carboxypentanoyl)-L-cysteinyl-D-valine synthase.	0.404
VDAG_00221	VDAG_07057	G2WRN8	G2XAF4	Peroxisomal-coenzyme A synthetase.	Acetyl-coenzyme A synthetase.	0.479
VDAG_00221	VDAG_08277	G2WRN8	G2XDP5	Peroxisomal-coenzyme A synthetase.	Acyl-coenzyme A synthetase ACSM5.	0.519
VDAG_00221	VDAG_08654	G2WRN8	G2XER9	Peroxisomal-coenzyme A synthetase.	Acetyl-coenzyme A synthetase.	0.479
VDAG_00221	VDAG_09589	G2WRN8	G2XHT9	Peroxisomal-coenzyme A synthetase.	Acetoacetyl-coenzyme A synthetase.	0.479
VDAG_00221	VDAG_09763	G2WRN8	G2XHK9	Peroxisomal-coenzyme A synthetase.	Enterobactin synthetase component F.	0.419
VDAG_00401	VDAG_03940	G2WS68	G2X111	Long-chain-fatty-acid-CoA ligase.	Long-chain-fatty-acid-CoA ligase.	0.940
VDAG_00401	VDAG_05523	G2WS68	G2X5L8	Long-chain-fatty-acid-CoA ligase.	Long-chain-fatty-acid-CoA ligase.	0.902
VDAG_00401	VDAG_06329	G2WS68	G2X771	Long-chain-fatty-acid-CoA ligase.	2-succinylbenzoate-CoA ligase.	0.427
VDAG_00401	VDAG_06757	G2WS68	G2X9C5	Long-chain-fatty-acid-CoA ligase.	Fatty acid transporter protein.	0.494
VDAG_01176	VDAG_01324	G2WTQ3	G2WU51	4-coumarate-CoA ligase.	Acetoacetyl-coenzyme A synthetase.	0.479
VDAG_01176	VDAG_02911	G2WTQ3	G2WXD2	4-coumarate-CoA ligase.	Surfactin synthetase subunit 3.	0.404
VDAG_01176	VDAG_03390	G2WTQ3	G2WZE8	4-coumarate-CoA ligase.	4-coumarate-CoA ligase.	0.906
VDAG_01176	VDAG_03964	G2WTQ3	G2X135	4-coumarate-CoA ligase.	Surfactin synthetase subunit 3.	0.404
VDAG_01176	VDAG_05314	G2WTQ3	G2X5Z8	4-coumarate-CoA ligase.	N-(5-amino-5-carboxypentanoyl)-L-cysteinyl-D-valine synthase.	0.404
VDAG_01176	VDAG_07057	G2WTQ3	G2XAF4	4-coumarate-CoA ligase.	Acetyl-coenzyme A synthetase.	0.479
VDAG_01176	VDAG_08277	G2WTQ3	G2XDP5	4-coumarate-CoA ligase.	Acyl-coenzyme A synthetase ACSM5.	0.535