(57 nodes) Winged helix-like DNA-binding domain superfamily network (Verticillium dahliae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDAG_04347	COP9 signalosome complex subunit 4. (425 aa)
	VDAG_07024	Heat shock factor protein. (661 aa)
	VDAG_06957	RING-2 protein. (144 aa)
	VDAG_06619	Forkhead box protein K2. (672 aa)
	VDAG_06269	Fork-head domain-containing protein. (456 aa)
	VDAG_06260	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family. (393 aa)
	VDAG_05936	Meiosis-specific transcription factor mei4. (747 aa)
	VDAG_05895	Cullin-4A; Belongs to the cullin family. (794 aa)
	VDAG_05845	Curved DNA-binding protein. (412 aa)
	VDAG_05678	Vacuolar-sorting protein SNF8. (254 aa)
	VDAG_04191	Pre-mRNA-splicing factor brr2. (2213 aa)
	VDAG_04477	Lysine-specific histone demethylase. (1074 aa)
	VDAG_04398	Cell division control protein; Belongs to the CDC6/cdc18 family. (605 aa)
	VDAG_04304	ATP-dependent helicase SGS1. (1518 aa)
	VDAG_04053	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (666 aa)
	VDAG_03984	Eukaryotic translation initiation factor 3 subunit K; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (231 aa)
	VDAG_03014	Transcription initiation factor iif. (368 aa)
	VDAG_03195	Crossover junction endonuclease MUS81. (567 aa)
	VDAG_02736	26S proteasome regulatory subunit RPN5. (492 aa)
	VDAG_01925	zf-RING-like domain-containing protein. (279 aa)
	VDAG_01880	Rho1 guanine nucleotide exchange factor 1. (1239 aa)
	VDAG_01842	Methionine aminopeptidase 2; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val). (441 aa)
	VDAG_01653	SWIRM domain-containing protein. (387 aa)
	VDAG_02325	Metallo-beta-lactamase domain-containing protein. (287 aa)
	VDAG_02250	Stress response regulator SrrA. (638 aa)
	VDAG_01498	Forkhead domain-containing protein. (1136 aa)
	VDAG_01414	Rho-GTPase-activating protein. (899 aa)
	VDAG_01397	Sak1. (795 aa)
	VDAG_01078	COP9 signalosome complex subunit 12. (473 aa)
	VDAG_00884	Pex14_N domain-containing protein. (377 aa)
	VDAG_00848	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (700 aa)
	VDAG_01543	Vacuolar protein-sorting-associated protein. (209 aa)
	VDAG_00058	40S ribosomal protein S19. (152 aa)
	VDAG_00770	Methionine aminopeptidase 2; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val). (465 aa)
	VDAG_00746	Transcriptional adapter 2; Functions as component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA and ADA. SAGA is involved in RNA polymerase II-dependent transcriptional regulation. (527 aa)
	VDAG_00738	Lupus La protein. (415 aa)
	VDAG_00693	Vacuolar membrane-associated protein iml-1. (2108 aa)
	VDAG_00683	Developmental regulator flbA. (754 aa)
	VDAG_09891	Vacuolar protein-sorting-associated protein. (640 aa)
	VDAG_09854	Histone H1. (218 aa)
	VDAG_09529	Methyltransf_2 domain-containing protein. (518 aa)
	VDAG_09396	ATP-dependent DNA helicase RecQ. (677 aa)
	VDAG_09359	Meiotic recombination protein rec12. (425 aa)
	VDAG_10143	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (518 aa)
	VDAG_10269	Replication factor-A protein. (294 aa)
	VDAG_10271	Serine/threonine-protein kinase RIO2. (418 aa)
	VDAG_10363	Cullin-3; Belongs to the cullin family. (833 aa)
	NIP1	Eukaryotic translation initiation factor 3 subunit C; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (872 aa)
	VDAG_08928	40S ribosomal protein S10-A. (167 aa)
	VDAG_09045	Transcription regulatory protein SWI3. (674 aa)
	VDAG_09015	Cullin-1; Belongs to the cullin family. (776 aa)
	VDAG_08950	Activating signal cointegrator 1 complex subunit 3. (1980 aa)
	VDAG_08825	La domain family. (798 aa)
	VDAG_08107	O-methyltransferase. (427 aa)
	VDAG_07599	DNA_binding_1 domain-containing protein. (104 aa)
	VDAG_07492	Flocculation suppression protein. (541 aa)
	VDAG_07463	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (1076 aa)

Your Current Organism:

Verticillium dahliae

NCBI taxonomy Id: 498257
Other names: V. dahliae VdLs.17, Verticillium dahliae VdLs.17

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NIP1	VDAG_00058	G2XJP3	G2WR75	Eukaryotic translation initiation factor 3 subunit C; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	40S ribosomal protein S19.	0.989
NIP1	VDAG_03984	G2XJP3	G2X155	Eukaryotic translation initiation factor 3 subunit C; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	Eukaryotic translation initiation factor 3 subunit K; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	0.999
NIP1	VDAG_05845	G2XJP3	G2X6R3	Eukaryotic translation initiation factor 3 subunit C; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	Curved DNA-binding protein.	0.484
NIP1	VDAG_08928	G2XJP3	G2XGE1	Eukaryotic translation initiation factor 3 subunit C; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	40S ribosomal protein S10-A.	0.990
VDAG_00058	NIP1	G2WR75	G2XJP3	40S ribosomal protein S19.	Eukaryotic translation initiation factor 3 subunit C; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	0.989
VDAG_00058	VDAG_00770	G2WR75	G2WQY9	40S ribosomal protein S19.	Methionine aminopeptidase 2; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val).	0.479
VDAG_00058	VDAG_01842	G2WR75	G2WW56	40S ribosomal protein S19.	Methionine aminopeptidase 2; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val).	0.479
VDAG_00058	VDAG_03984	G2WR75	G2X155	40S ribosomal protein S19.	Eukaryotic translation initiation factor 3 subunit K; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	0.966
VDAG_00058	VDAG_05845	G2WR75	G2X6R3	40S ribosomal protein S19.	Curved DNA-binding protein.	0.848
VDAG_00058	VDAG_08928	G2WR75	G2XGE1	40S ribosomal protein S19.	40S ribosomal protein S10-A.	0.999
VDAG_00058	VDAG_10271	G2WR75	G2XJD9	40S ribosomal protein S19.	Serine/threonine-protein kinase RIO2.	0.977
VDAG_00770	VDAG_00058	G2WQY9	G2WR75	Methionine aminopeptidase 2; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val).	40S ribosomal protein S19.	0.479
VDAG_00848	VDAG_06619	G2WSR7	G2X8Y7	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.	Forkhead box protein K2.	0.433
VDAG_01397	VDAG_06619	G2WUC4	G2X8Y7	Sak1.	Forkhead box protein K2.	0.665
VDAG_01543	VDAG_05678	G2WSE0	G2X696	Vacuolar protein-sorting-associated protein.	Vacuolar-sorting protein SNF8.	0.999
VDAG_01543	VDAG_09891	G2WSE0	G2XIA9	Vacuolar protein-sorting-associated protein.	Vacuolar protein-sorting-associated protein.	0.999
VDAG_01842	VDAG_00058	G2WW56	G2WR75	Methionine aminopeptidase 2; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val).	40S ribosomal protein S19.	0.479
VDAG_01925	VDAG_10269	G2WWD9	G2XJD7	zf-RING-like domain-containing protein.	Replication factor-A protein.	0.422
VDAG_02250	VDAG_07024	G2WVA9	G2XAC1	Stress response regulator SrrA.	Heat shock factor protein.	0.638
VDAG_02736	VDAG_04347	G2WWV7	G2X223	26S proteasome regulatory subunit RPN5.	COP9 signalosome complex subunit 4.	0.732