(8 nodes) RGS, subdomain 2 network (Verticillium dahliae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDAG_08194	Uncharacterized protein. (573 aa)
	VDAG_02523	Uncharacterized protein. (445 aa)
	VDAG_02225	RGS domain-containing protein. (338 aa)
	VDAG_00979	Regulator of G-protein signaling domain-containing protein. (362 aa)
	VDAG_00799	PAS domain-containing protein. (592 aa)
	VDAG_00683	Developmental regulator flbA. (754 aa)
	VDAG_10098	Uncharacterized protein. (1008 aa)
	VDAG_09977	RGS domain-containing protein. (537 aa)

Your Current Organism:

Verticillium dahliae

NCBI taxonomy Id: 498257
Other names: V. dahliae VdLs.17, Verticillium dahliae VdLs.17

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDAG_00683	VDAG_00979	G2WQP1	G2WT56	Developmental regulator flbA.	Regulator of G-protein signaling domain-containing protein.	0.734
VDAG_00683	VDAG_02225	G2WQP1	G2WV84	Developmental regulator flbA.	RGS domain-containing protein.	0.440
VDAG_00683	VDAG_02523	G2WQP1	G2WY41	Developmental regulator flbA.	Uncharacterized protein.	0.440
VDAG_00683	VDAG_08194	G2WQP1	G2XDG2	Developmental regulator flbA.	Uncharacterized protein.	0.464
VDAG_00683	VDAG_09977	G2WQP1	G2XIJ5	Developmental regulator flbA.	RGS domain-containing protein.	0.464
VDAG_00683	VDAG_10098	G2WQP1	G2XIX5	Developmental regulator flbA.	Uncharacterized protein.	0.587
VDAG_00979	VDAG_00683	G2WT56	G2WQP1	Regulator of G-protein signaling domain-containing protein.	Developmental regulator flbA.	0.734
VDAG_00979	VDAG_02225	G2WT56	G2WV84	Regulator of G-protein signaling domain-containing protein.	RGS domain-containing protein.	0.448
VDAG_00979	VDAG_02523	G2WT56	G2WY41	Regulator of G-protein signaling domain-containing protein.	Uncharacterized protein.	0.440
VDAG_00979	VDAG_08194	G2WT56	G2XDG2	Regulator of G-protein signaling domain-containing protein.	Uncharacterized protein.	0.440
VDAG_00979	VDAG_09977	G2WT56	G2XIJ5	Regulator of G-protein signaling domain-containing protein.	RGS domain-containing protein.	0.440
VDAG_00979	VDAG_10098	G2WT56	G2XIX5	Regulator of G-protein signaling domain-containing protein.	Uncharacterized protein.	0.771
VDAG_02225	VDAG_00683	G2WV84	G2WQP1	RGS domain-containing protein.	Developmental regulator flbA.	0.440
VDAG_02225	VDAG_00979	G2WV84	G2WT56	RGS domain-containing protein.	Regulator of G-protein signaling domain-containing protein.	0.448
VDAG_02225	VDAG_08194	G2WV84	G2XDG2	RGS domain-containing protein.	Uncharacterized protein.	0.453
VDAG_02225	VDAG_09977	G2WV84	G2XIJ5	RGS domain-containing protein.	RGS domain-containing protein.	0.453
VDAG_02225	VDAG_10098	G2WV84	G2XIX5	RGS domain-containing protein.	Uncharacterized protein.	0.448
VDAG_02523	VDAG_00683	G2WY41	G2WQP1	Uncharacterized protein.	Developmental regulator flbA.	0.440
VDAG_02523	VDAG_00979	G2WY41	G2WT56	Uncharacterized protein.	Regulator of G-protein signaling domain-containing protein.	0.440
VDAG_02523	VDAG_08194	G2WY41	G2XDG2	Uncharacterized protein.	Uncharacterized protein.	0.453