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VDAG_05840 VDAG_05840 VDAG_00462 VDAG_00462 VDAG_00471 VDAG_00471 VDAG_00582 VDAG_00582 LSM4 LSM4 VDAG_00737 VDAG_00737 VDAG_00738 VDAG_00738 VDAG_00011 VDAG_00011 VDAG_00074 VDAG_00074 VDAG_00096 VDAG_00096 VDAG_00125 VDAG_00125 VDAG_00180 VDAG_00180 VDAG_00216 VDAG_00216 VDAG_00247 VDAG_00247 VDAG_00263 VDAG_00263 VDAG_00345 VDAG_00345 VDAG_00399 VDAG_00399 TIF35 TIF35 VDAG_00443 VDAG_00443 VDAG_01629 VDAG_01629 ALA1 ALA1 VDAG_01001 VDAG_01001 VDAG_01099 VDAG_01099 VDAG_01247 VDAG_01247 VDAG_01328 VDAG_01328 VDAG_01381 VDAG_01381 VDAG_01384 VDAG_01384 VDAG_01442 VDAG_01442 VDAG_01644 VDAG_01644 VDAG_02007 VDAG_02007 VDAG_02020 VDAG_02020 VDAG_02725 VDAG_02725 VDAG_02758 VDAG_02758 VDAG_02878 VDAG_02878 PRT1 PRT1 VDAG_02440 VDAG_02440 VDAG_02449 VDAG_02449 VDAG_02473 VDAG_02473 VDAG_02494 VDAG_02494 VDAG_02528 VDAG_02528 VDAG_02543 VDAG_02543 VDAG_02565 VDAG_02565 VDAG_02606 VDAG_02606 LSM8 LSM8 VDAG_03182 VDAG_03182 VDAG_03213 VDAG_03213 VDAG_03247 VDAG_03247 VDAG_03252 VDAG_03252 VDAG_03265 VDAG_03265 VDAG_03291 VDAG_03291 VDAG_03303 VDAG_03303 VDAG_03063 VDAG_03063 VDAG_03069 VDAG_03069 VDAG_03710 VDAG_03710 VDAG_03945 VDAG_03945 VDAG_04254 VDAG_04254 VDAG_04370 VDAG_04370 VDAG_04386 VDAG_04386 VDAG_04412 VDAG_04412 VDAG_04200 VDAG_04200 VDAG_04215 VDAG_04215 VDAG_04577 VDAG_04577 VDAG_05474 VDAG_05474 VDAG_05536 VDAG_05536 VDAG_05774 VDAG_05774 VDAG_05874 VDAG_05874 VDAG_10424 VDAG_10424 VDAG_10420 VDAG_10420 VDAG_10256 VDAG_10256 VDAG_10099 VDAG_10099 TRM8 TRM8 VDAG_09937 VDAG_09937 LSM3 LSM3 VDAG_09778 VDAG_09778 VDAG_09472 VDAG_09472 VDAG_09450 VDAG_09450 VDAG_09442 VDAG_09442 VDAG_09437 VDAG_09437 VDAG_09300 VDAG_09300 VDAG_08924 VDAG_08924 VDAG_08895 VDAG_08895 VDAG_08864 VDAG_08864 VDAG_08825 VDAG_08825 VDAG_08679 VDAG_08679 VDAG_08466 VDAG_08466 VDAG_08454 VDAG_08454 LSM5 LSM5 VDAG_08057 VDAG_08057 VDAG_07997 VDAG_07997 VDAG_07967 VDAG_07967 VDAG_07629 VDAG_07629 VDAG_07628 VDAG_07628 NCS6 NCS6 VDAG_07347 VDAG_07347 VDAG_07019 VDAG_07019 VDAG_06981 VDAG_06981 VDAG_06945 VDAG_06945 VDAG_06908 VDAG_06908 VDAG_06693 VDAG_06693 VDAG_06680 VDAG_06680 VDAG_06648 VDAG_06648 CLU1 CLU1 VDAG_06596 VDAG_06596 VDAG_06186 VDAG_06186 VDAG_06486 VDAG_06486 TIF32 TIF32 VDAG_06378 VDAG_06378 VDAG_06364 VDAG_06364 VDAG_06323 VDAG_06323 VDAG_05893 VDAG_05893
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
VDAG_05840Pumilio domain-containing protein. (1160 aa)
VDAG_00462CCCH zinc finger and RRM domain-containing protein. (664 aa)
VDAG_00471RNase3 domain-containing protein; Belongs to the helicase family. Dicer subfamily. (1563 aa)
VDAG_00582N2,N2-dimethylguanosine tRNA methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. Trm1 family. (839 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (130 aa)
VDAG_00737S4 RNA-binding domain-containing protein. (515 aa)
VDAG_00738Lupus La protein. (415 aa)
VDAG_00011rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. (337 aa)
VDAG_00074Polyadenylate-binding protein. (205 aa)
VDAG_00096D-aminoacyl-tRNA deacylase. (160 aa)
VDAG_00125Nuclear polyadenylated RNA-binding protein. (484 aa)
VDAG_00180U3 small nucleolar ribonucleoprotein IMP3. (183 aa)
VDAG_00216Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (231 aa)
VDAG_00247Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (125 aa)
VDAG_00263Uncharacterized protein. (389 aa)
VDAG_00345Glycine-rich protein. (375 aa)
VDAG_00399Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (94 aa)
TIF35Eukaryotic translation initiation factor 3 subunit G; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. This subunit can bind 18S rRNA. (297 aa)
VDAG_00443Signal recognition particle subunit SRP68; Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane; Belongs to the SRP68 family. (632 aa)
VDAG_01629Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (759 aa)
ALA1Alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain. Belongs to the class-II aminoacyl-tRNA synthetase family. (958 aa)
VDAG_01001Multiple RNA-binding domain-containing protein. (866 aa)
VDAG_01099Eukaryotic translation initiation factor 4E-1; Belongs to the eukaryotic initiation factor 4E family. (255 aa)
VDAG_01247RNA helicase. (587 aa)
VDAG_01328Eukaryotic translation initiation factor 4E-4; Belongs to the eukaryotic initiation factor 4E family. (349 aa)
VDAG_01381Asparagine-rich protein. (628 aa)
VDAG_013845'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins. (1404 aa)
VDAG_01442Eukaryotic translation initiation factor 4E-4; Belongs to the eukaryotic initiation factor 4E family. (253 aa)
VDAG_01644Pre-mRNA-splicing factor slt-11. (381 aa)
VDAG_02007LSM domain-containing protein. (79 aa)
VDAG_02020RRM domain-containing protein. (673 aa)
VDAG_02725RRM domain-containing protein. (309 aa)
VDAG_02758RNA-binding motif protein. (333 aa)
VDAG_02878RNA-binding post-transcriptional regulator csx1. (418 aa)
PRT1Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family. (745 aa)
VDAG_0244040S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family. (191 aa)
VDAG_02449RRM domain-containing protein. (597 aa)
VDAG_02473RNA binding protein. (307 aa)
VDAG_02494Ribosomal protein L37; Binds to the 23S rRNA. (97 aa)
VDAG_02528RNA-dependent RNA polymerase. (1444 aa)
VDAG_0254340S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family. (262 aa)
VDAG_02565RNA binding protein. (508 aa)
VDAG_02606Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. (509 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (99 aa)
VDAG_03182U2 small nuclear ribonucleoprotein B. (194 aa)
VDAG_03213Eukaryotic translation initiation factor 3 subunit D; mRNA cap-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. In the eIF-3 complex, eif3d specifically recognizes and binds the 7- methylguanosine cap of a subset of mRNAs. (555 aa)
VDAG_03247RNA-dependent RNA polymerase. (1394 aa)
VDAG_03252Glycine-rich RNA-binding protein. (175 aa)
VDAG_03265LSM domain-containing protein. (84 aa)
VDAG_03291RRM domain-containing protein. (149 aa)
VDAG_03303Nucleolar protein. (550 aa)
VDAG_03063U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (589 aa)
VDAG_03069Pre-mRNA branch site protein p14. (117 aa)
VDAG_03710SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (585 aa)
VDAG_03945Rpb7-binding protein seb1. (703 aa)
VDAG_04254RNA-binding protein. (306 aa)
VDAG_04370RRM domain-containing protein. (440 aa)
VDAG_04386Gar2. (485 aa)
VDAG_04412RNA-binding protein. (383 aa)
VDAG_04200Splicing factor U2AF 23 kDa subunit. (210 aa)
VDAG_04215RNA binding domain-containing protein. (329 aa)
VDAG_04577RNA-binding protein. (344 aa)
VDAG_05474General negative regulator of transcription subunit 4. (1611 aa)
VDAG_05536mRNA cap guanine-N7 methyltransferase. (406 aa)
VDAG_05774RRM domain-containing protein. (424 aa)
VDAG_05874Nuclear cap-binding protein subunit 2. (186 aa)
VDAG_10424U1 small nuclear ribonucleoprotein A. (246 aa)
VDAG_10420tRNA nucleotidyltransferase; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. (529 aa)
VDAG_10256ATP-dependent RNA helicase DBP10. (899 aa)
VDAG_10099Pre-mRNA splicing factor. (322 aa)
TRM8tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. (279 aa)
VDAG_09937Cleavage and polyadenylation specificity factor subunit 2. (972 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
VDAG_09778Exportin-T; tRNA nucleus export receptor which facilitates tRNA translocation across the nuclear pore complex. Belongs to the exportin family. (1020 aa)
VDAG_09472U3 small nucleolar RNA-associated protein 22. (1127 aa)
VDAG_09450H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs. (203 aa)
VDAG_09442THUMP domain-containing protein. (340 aa)
VDAG_09437RNP domain-containing protein. (458 aa)
VDAG_09300Signal recognition particle 54 kDa protein; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein). Belongs to the GTP-binding SRP family. SRP54 subfamily. (525 aa)
VDAG_08924Peptidyl-prolyl cis-trans isomerase E. (153 aa)
VDAG_08895Nop16-like protein NOP2; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (703 aa)
VDAG_08864RRM domain-containing protein. (256 aa)
VDAG_08825La domain family. (798 aa)
VDAG_08679U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (179 aa)
VDAG_08466Pre-mRNA-splicing factor CWC2. (411 aa)
VDAG_08454Splicing factor 3B subunit 4. (498 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (80 aa)
VDAG_08057ATP-dependent RNA helicase DBP7; Belongs to the DEAD box helicase family. (778 aa)
VDAG_07997RNA helicase. (757 aa)
VDAG_07967GU4 nucleic-binding protein. (422 aa)
VDAG_07629RNA-dependent RNA polymerase. (1310 aa)
VDAG_07628RNA-binding post-transcriptional regulator cip2. (601 aa)
NCS6Cytoplasmic tRNA 2-thiolation protein 1; Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Directly binds tRNAs and probably acts by catalyzing adenylation of tRNAs, an intermediate required for 2-thiolation. It is unclear whether it acts as a sulfurtransferase that transfers sulfur from thiocarboxylated URM1 onto the uridine of tRNAs at wobble position. Prior mcm(5) tRNA modification by the elongator complex is required for 2-thiolation. May also be involved in protein urmylation. (399 aa)
VDAG_07347Vip1. (276 aa)
VDAG_07019RNA-binding protein rsd1. (570 aa)
VDAG_06981Ribosomal biogenesis protein Gar2. (386 aa)
VDAG_06945Uncharacterized protein. (1187 aa)
VDAG_06908RNA12 protein. (850 aa)
VDAG_06693Uncharacterized protein. (1082 aa)
VDAG_06680RRM domain-containing protein. (209 aa)
VDAG_06648Nucleolysin TIA-1. (489 aa)
CLU1Clustered mitochondria protein homolog; mRNA-binding protein involved in proper cytoplasmic distribution of mitochondria. (1268 aa)
VDAG_06596RRM domain-containing protein. (650 aa)
VDAG_06186Small nuclear ribonucleoprotein G. (85 aa)
VDAG_0648660S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (185 aa)
TIF32Eukaryotic translation initiation factor 3 subunit A; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (1066 aa)
VDAG_0637840S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family. (262 aa)
VDAG_06364RNA recognition motif containing protein. (810 aa)
VDAG_06323Nucleolar protein. (785 aa)
VDAG_05893U1 small nuclear ribonucleoprotein. (416 aa)
Your Current Organism:
Verticillium dahliae
NCBI taxonomy Id: 498257
Other names: V. dahliae VdLs.17, Verticillium dahliae VdLs.17
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