22 items (Verticillium dahliae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDAG_04215	RNA binding domain-containing protein. (329 aa)
	VDAG_04257	Uncharacterized protein. (1563 aa)
	VDAG_03000	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (901 aa)
	VDAG_09692	Ran-specific GTPase-activating protein. (257 aa)
	VDAG_09691	Uncharacterized protein. (786 aa)
	VDAG_08864	RRM domain-containing protein. (256 aa)
	VDAG_08795	Uncharacterized protein. (1200 aa)
	VDAG_08541	Uncharacterized protein. (1407 aa)
	VDAG_07497	Nuclear envelope protein. (638 aa)
	VDAG_07456	Nucleoporin nup189. (1956 aa)
	VDAG_06735	WD repeat-containing protein. (419 aa)
	VDAG_02729	Nucleoporin nup44. (358 aa)
	VDAG_01848	Poly(A)+ RNA export protein. (358 aa)
	VDAG_01219	Nucleoporin NIC96. (1177 aa)
	VDAG_00380	RanBD1 domain-containing protein. (491 aa)
	VDAG_00742	Nucleoporin Nup157/170. (1396 aa)
	VDAG_06650	Uncharacterized protein. (309 aa)
	VDAG_05897	Uncharacterized protein. (1665 aa)
	VDAG_05875	Uncharacterized protein. (888 aa)
	VDAG_05737	Nup188_C domain-containing protein. (1795 aa)
	VDAG_05438	TPR_MLP1_2 domain-containing protein. (2093 aa)
	VDAG_03152	mRNA export factor mex67. (649 aa)

Your Current Organism:

Verticillium dahliae

NCBI taxonomy Id: 498257
Other names: V. dahliae VdLs.17, Verticillium dahliae VdLs.17

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDAG_00380	VDAG_00742	G2WS47	G2WQV0	RanBD1 domain-containing protein.	Nucleoporin Nup157/170.	0.862
VDAG_00380	VDAG_01219	G2WS47	G2WTU6	RanBD1 domain-containing protein.	Nucleoporin NIC96.	0.879
VDAG_00380	VDAG_01848	G2WS47	G2WW62	RanBD1 domain-containing protein.	Poly(A)+ RNA export protein.	0.726
VDAG_00380	VDAG_02729	G2WS47	G2WWV0	RanBD1 domain-containing protein.	Nucleoporin nup44.	0.825
VDAG_00380	VDAG_03000	G2WS47	G2WZX7	RanBD1 domain-containing protein.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.820
VDAG_00380	VDAG_03152	G2WS47	G2WYR0	RanBD1 domain-containing protein.	mRNA export factor mex67.	0.714
VDAG_00380	VDAG_04215	G2WS47	G2X321	RanBD1 domain-containing protein.	RNA binding domain-containing protein.	0.491
VDAG_00380	VDAG_04257	G2WS47	G2X1T3	RanBD1 domain-containing protein.	Uncharacterized protein.	0.843
VDAG_00380	VDAG_05897	G2WS47	G2X6W5	RanBD1 domain-containing protein.	Uncharacterized protein.	0.815
VDAG_00380	VDAG_07456	G2WS47	G2XB26	RanBD1 domain-containing protein.	Nucleoporin nup189.	0.560
VDAG_00380	VDAG_08541	G2WS47	G2XEF6	RanBD1 domain-containing protein.	Uncharacterized protein.	0.810
VDAG_00380	VDAG_08864	G2WS47	G2XG77	RanBD1 domain-containing protein.	RRM domain-containing protein.	0.491
VDAG_00742	VDAG_00380	G2WQV0	G2WS47	Nucleoporin Nup157/170.	RanBD1 domain-containing protein.	0.862
VDAG_00742	VDAG_01219	G2WQV0	G2WTU6	Nucleoporin Nup157/170.	Nucleoporin NIC96.	0.999
VDAG_00742	VDAG_01848	G2WQV0	G2WW62	Nucleoporin Nup157/170.	Poly(A)+ RNA export protein.	0.977
VDAG_00742	VDAG_02729	G2WQV0	G2WWV0	Nucleoporin Nup157/170.	Nucleoporin nup44.	0.997
VDAG_00742	VDAG_03000	G2WQV0	G2WZX7	Nucleoporin Nup157/170.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.993
VDAG_00742	VDAG_03152	G2WQV0	G2WYR0	Nucleoporin Nup157/170.	mRNA export factor mex67.	0.774
VDAG_00742	VDAG_04215	G2WQV0	G2X321	Nucleoporin Nup157/170.	RNA binding domain-containing protein.	0.665
VDAG_00742	VDAG_04257	G2WQV0	G2X1T3	Nucleoporin Nup157/170.	Uncharacterized protein.	0.990