18 items (Verticillium dahliae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDAG_00638	Uncharacterized protein. (452 aa)
	VDAG_00139	Uncharacterized protein. (1060 aa)
	VDAG_00214	Nuclear envelope morphology protein. (452 aa)
	VDAG_00412	Nuclear pore complex subunit; Belongs to the WD repeat SEC13 family. (544 aa)
	VDAG_02130	Uncharacterized protein. (824 aa)
	VDAG_01751	Uncharacterized protein. (997 aa)
	VDAG_03374	PA14 domain-containing protein. (342 aa)
	VDAG_03821	Uncharacterized protein. (658 aa)
	VDAG_04257	Uncharacterized protein. (1563 aa)
	VDAG_04415	Uncharacterized protein. (691 aa)
	VDAG_04456	Nuclear pore glycoprotein p62. (721 aa)
	VDAG_06873	Nuclear elongation and deformation protein. (774 aa)
	VDAG_07353	Uncharacterized protein. (443 aa)
	VDAG_08156	Uncharacterized protein. (241 aa)
	VDAG_08161	Uncharacterized protein. (457 aa)
	VDAG_08357	FCP1 homology domain-containing protein. (216 aa)
	VDAG_09248	Cellulose-growth-specific protein. (223 aa)
	VDAG_09949	CCCH zinc finger domain-containing protein. (599 aa)

Your Current Organism:

Verticillium dahliae

NCBI taxonomy Id: 498257
Other names: V. dahliae VdLs.17, Verticillium dahliae VdLs.17

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDAG_00139	VDAG_00412	G2WRF6	G2WS79	Uncharacterized protein.	Nuclear pore complex subunit; Belongs to the WD repeat SEC13 family.	0.999
VDAG_00139	VDAG_01751	G2WRF6	G2WVW5	Uncharacterized protein.	Uncharacterized protein.	0.649
VDAG_00139	VDAG_02130	G2WRF6	G2WUY9	Uncharacterized protein.	Uncharacterized protein.	0.979
VDAG_00139	VDAG_03374	G2WRF6	G2WZD2	Uncharacterized protein.	PA14 domain-containing protein.	0.979
VDAG_00139	VDAG_04257	G2WRF6	G2X1T3	Uncharacterized protein.	Uncharacterized protein.	0.999
VDAG_00139	VDAG_04415	G2WRF6	G2X291	Uncharacterized protein.	Uncharacterized protein.	0.979
VDAG_00139	VDAG_04456	G2WRF6	G2X2D2	Uncharacterized protein.	Nuclear pore glycoprotein p62.	0.999
VDAG_00139	VDAG_07353	G2WRF6	G2XAX4	Uncharacterized protein.	Uncharacterized protein.	0.979
VDAG_00139	VDAG_08156	G2WRF6	G2XDC4	Uncharacterized protein.	Uncharacterized protein.	0.979
VDAG_00139	VDAG_08161	G2WRF6	G2XDC9	Uncharacterized protein.	Uncharacterized protein.	0.649
VDAG_00139	VDAG_09248	G2WRF6	G2XGG6	Uncharacterized protein.	Cellulose-growth-specific protein.	0.979
VDAG_00139	VDAG_09949	G2WRF6	G2XIG7	Uncharacterized protein.	CCCH zinc finger domain-containing protein.	0.649
VDAG_00214	VDAG_00638	G2WRN1	G2WQJ6	Nuclear envelope morphology protein.	Uncharacterized protein.	0.922
VDAG_00214	VDAG_03821	G2WRN1	G2X0P2	Nuclear envelope morphology protein.	Uncharacterized protein.	0.798
VDAG_00214	VDAG_06873	G2WRN1	G2X9P1	Nuclear envelope morphology protein.	Nuclear elongation and deformation protein.	0.967
VDAG_00412	VDAG_00139	G2WS79	G2WRF6	Nuclear pore complex subunit; Belongs to the WD repeat SEC13 family.	Uncharacterized protein.	0.999
VDAG_00412	VDAG_01751	G2WS79	G2WVW5	Nuclear pore complex subunit; Belongs to the WD repeat SEC13 family.	Uncharacterized protein.	0.764
VDAG_00412	VDAG_02130	G2WS79	G2WUY9	Nuclear pore complex subunit; Belongs to the WD repeat SEC13 family.	Uncharacterized protein.	0.545
VDAG_00412	VDAG_03374	G2WS79	G2WZD2	Nuclear pore complex subunit; Belongs to the WD repeat SEC13 family.	PA14 domain-containing protein.	0.545
VDAG_00412	VDAG_04257	G2WS79	G2X1T3	Nuclear pore complex subunit; Belongs to the WD repeat SEC13 family.	Uncharacterized protein.	0.993