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VDAG_04574 VDAG_04574 VDAG_10455 VDAG_10455 VDAG_10430 VDAG_10430 VDAG_10223 VDAG_10223 VDAG_10182 VDAG_10182 VDAG_10130 VDAG_10130 VDAG_10031 VDAG_10031 VDAG_10019 VDAG_10019 VDAG_09544 VDAG_09544 VDAG_09315 VDAG_09315 VDAG_09042 VDAG_09042 VDAG_08811 VDAG_08811 VDAG_08807 VDAG_08807 VDAG_08694 VDAG_08694 VDAG_08636 VDAG_08636 VDAG_08627 VDAG_08627 VDAG_08575 VDAG_08575 VDAG_08432 VDAG_08432 VDAG_08425 VDAG_08425 VDAG_08414 VDAG_08414 VDAG_08363 VDAG_08363 VDAG_08347 VDAG_08347 VDAG_07801 VDAG_07801 VDAG_07504 VDAG_07504 VDAG_07469 VDAG_07469 VDAG_07377 VDAG_07377 VDAG_07095 VDAG_07095 VDAG_07068 VDAG_07068 VDAG_07004 VDAG_07004 VDAG_06875 VDAG_06875 VDAG_06842 VDAG_06842 VDAG_06114 VDAG_06114 VDAG_06076 VDAG_06076 VDAG_05959 VDAG_05959 VDAG_06270 VDAG_06270 VDAG_06451 VDAG_06451 VDAG_06330 VDAG_06330 VDAG_05954 VDAG_05954 VDAG_05874 VDAG_05874 VDAG_05625 VDAG_05625 VDAG_05018 VDAG_05018 VDAG_04649 VDAG_04649 VDAG_04819 VDAG_04819 VDAG_04432 VDAG_04432 VDAG_04392 VDAG_04392 VDAG_04383 VDAG_04383 VDAG_03923 VDAG_03923 VDAG_03750 VDAG_03750 VDAG_03014 VDAG_03014 VDAG_03521 VDAG_03521 VDAG_03186 VDAG_03186 VDAG_02393 VDAG_02393 VDAG_01824 VDAG_01824 VDAG_01670 VDAG_01670 VDAG_01224 VDAG_01224 VDAG_01211 VDAG_01211 VDAG_01058 VDAG_01058 VDAG_00994 VDAG_00994 VDAG_00940 VDAG_00940 VDAG_00839 VDAG_00839 VDAG_01612 VDAG_01612 VDAG_01571 VDAG_01571 VDAG_00385 VDAG_00385 VDAG_00141 VDAG_00141 VDAG_00727 VDAG_00727 VDAG_00690 VDAG_00690 VDAG_00682 VDAG_00682
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
VDAG_04574Transcription initiation factor IIE subunit alpha. (411 aa)
VDAG_10455Cyclin mcs2. (359 aa)
VDAG_10430DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (152 aa)
VDAG_10223Uncharacterized protein. (491 aa)
VDAG_10182Uncharacterized protein. (275 aa)
VDAG_10130Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (722 aa)
VDAG_10031DNA repair helicase RAD3. (772 aa)
VDAG_10019RNA polymerase II transcription factor B subunit 1. (547 aa)
VDAG_09544RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II. (818 aa)
VDAG_09315Transcription initiation factor TFIID subunit 6. (394 aa)
VDAG_09042Uncharacterized protein. (590 aa)
VDAG_08811RPOL4c domain-containing protein. (160 aa)
VDAG_08807TPR domain-containing protein. (379 aa)
VDAG_08694Uncharacterized protein. (410 aa)
VDAG_08636FACT complex subunit SPT16. (1029 aa)
VDAG_08627Transcription elongation factor Spt6; Plays a role in maintenance of chromatin structure during RNA polymerase II transcription elongation thereby repressing transcription initiation from cryptic promoters. Mediates the reassembly of nucleosomes onto the promoters of at least a selected set of genes during repression; the nucleosome reassembly is essential for transcriptional repression; Belongs to the SPT6 family. (1412 aa)
VDAG_08575Acyl_transf_3 domain-containing protein. (517 aa)
VDAG_08432Cap binding protein. (795 aa)
VDAG_08425DNA-directed RNA polymerase II. (151 aa)
VDAG_08414Uncharacterized protein. (325 aa)
VDAG_08363Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene. (112 aa)
VDAG_08347Serine/threonine-protein kinase BUR1; Belongs to the protein kinase superfamily. (436 aa)
VDAG_07801Metallothionein-I transcription activator. (81 aa)
VDAG_07504RNA polymerase II transcription factor B subunit 4. (398 aa)
VDAG_07469Uncharacterized protein. (561 aa)
VDAG_07377RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (476 aa)
VDAG_07095Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...] (224 aa)
VDAG_07068DNA-directed RNA polymerase II subunit RPB3. (342 aa)
VDAG_07004Uncharacterized protein. (167 aa)
VDAG_06875Transcription initiation factor TFIID subunit 9. (312 aa)
VDAG_06842RNA polymerase II transcription factor B subunit 3. (353 aa)
VDAG_06114DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1755 aa)
VDAG_06076Uncharacterized protein. (412 aa)
VDAG_05959Uncharacterized protein. (2993 aa)
VDAG_06270Uncharacterized protein. (513 aa)
VDAG_06451DNA-directed RNA polymerases I. (149 aa)
VDAG_06330FACT complex subunit POB3; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of [...] (334 aa)
VDAG_05954Tetratricopeptide repeat protein. (1150 aa)
VDAG_05874Nuclear cap-binding protein subunit 2. (186 aa)
VDAG_05625DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1260 aa)
VDAG_05018TAFII28 domain-containing protein. (327 aa)
VDAG_04649Transcription initiation factor TFIID subunit 5. (759 aa)
VDAG_04819GCR1_C domain-containing protein. (689 aa)
VDAG_04432Cyclin-K; Belongs to the cyclin family. (437 aa)
VDAG_04392DNA-directed RNA polymerase II subunit RPB7. (171 aa)
VDAG_04383Transcription initiation factor TFIID subunit 7. (506 aa)
VDAG_03923General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (461 aa)
VDAG_03750DNA repair helicase RAD25. (792 aa)
VDAG_03014Transcription initiation factor iif. (368 aa)
VDAG_03521Transcription initiation factor IIB. (352 aa)
VDAG_03186Uncharacterized protein. (577 aa)
VDAG_02393GCR1_C domain-containing protein. (300 aa)
VDAG_01824RNA polymerase-associated protein RTF1. (610 aa)
VDAG_01670Transcription factor IWS1. (426 aa)
VDAG_01224Uncharacterized protein. (356 aa)
VDAG_01211Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene. (1062 aa)
VDAG_01058Transcription initiation factor TFIID 127kD subunit. (1533 aa)
VDAG_00994DNA-directed RNA polymerases I/II/III subunit 10. (76 aa)
VDAG_00940Transcription initiation factor TFIID subunit 1. (1158 aa)
VDAG_00839Transcription initiation factor TFIID subunit 12. (751 aa)
VDAG_01612TATA-box-binding protein. (249 aa)
VDAG_01571Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (277 aa)
VDAG_00385Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (115 aa)
VDAG_00141RNA polymerase II transcription factor B subunit 5. (71 aa)
VDAG_00727C-type cyclin; Belongs to the cyclin family. (482 aa)
VDAG_00690DNA-directed RNA polymerases I. (231 aa)
VDAG_00682Cell division control protein. (411 aa)
Your Current Organism:
Verticillium dahliae
NCBI taxonomy Id: 498257
Other names: V. dahliae VdLs.17, Verticillium dahliae VdLs.17
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