70 items (Verticillium dahliae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDAG_03186	Uncharacterized protein. (577 aa)
	VDAG_00537	CBFD_NFYB_HMF domain-containing protein. (118 aa)
	VDAG_00550	COP9 signalosome complex subunit 6. (413 aa)
	VDAG_00690	DNA-directed RNA polymerases I. (231 aa)
	VDAG_00787	CPSF_A domain-containing protein. (1160 aa)
	VDAG_00095	41 kDa peptidyl-prolyl cis-trans isomerase. (386 aa)
	VDAG_00141	RNA polymerase II transcription factor B subunit 5. (71 aa)
	VDAG_00156	DNA excision repair protein ERCC-6. (1061 aa)
	VDAG_00163	DNA excision repair protein ERCC-8. (479 aa)
	VDAG_00980	ACOB protein. (276 aa)
	VDAG_00986	DNA-repair protein rad13. (1187 aa)
	VDAG_00994	DNA-directed RNA polymerases I/II/III subunit 10. (76 aa)
	VDAG_02255	USP domain-containing protein; Belongs to the peptidase C19 family. (1375 aa)
	VDAG_01793	DNA repair protein rad16. (955 aa)
	VDAG_02779	COP9 signalosome complex subunit 2. (491 aa)
	VDAG_02645	Pre-mRNA-splicing factor ISY1. (245 aa)
	VDAG_03725	COP9 signalosome complex subunit 1. (466 aa)
	VDAG_03750	DNA repair helicase RAD25. (792 aa)
	VDAG_03915	UDP-galactopyranose mutase. (329 aa)
	VDAG_03923	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (461 aa)
	VDAG_04347	COP9 signalosome complex subunit 4. (425 aa)
	VDAG_04392	DNA-directed RNA polymerase II subunit RPB7. (171 aa)
	VDAG_04192	Replication factor C subunit 2. (380 aa)
	VDAG_05478	Zds1. (964 aa)
	VDAG_05625	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1260 aa)
	VDAG_05306	C2H2-type domain-containing protein. (359 aa)
	VDAG_05308	Uncharacterized protein. (826 aa)
	VDAG_05895	Cullin-4A; Belongs to the cullin family. (794 aa)
	VDAG_06301	RING-box protein. (119 aa)
	VDAG_06395	Uncharacterized protein. (1216 aa)
	VDAG_06451	DNA-directed RNA polymerases I. (149 aa)
	VDAG_06533	Uncharacterized protein. (167 aa)
	VDAG_06035	DNA polymerase kappa. (630 aa)
	VDAG_06114	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1755 aa)
	VDAG_06654	Intron-binding protein aquarius. (1267 aa)
	VDAG_06842	RNA polymerase II transcription factor B subunit 3. (353 aa)
	VDAG_07058	Replication factor C subunit 5. (350 aa)
	VDAG_07060	Replication factor C subunit 1. (1040 aa)
	VDAG_07068	DNA-directed RNA polymerase II subunit RPB3. (342 aa)
	VDAG_07098	DNA repair protein RAD14. (391 aa)
	VDAG_07377	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (476 aa)
	VDAG_07485	Uncharacterized protein. (193 aa)
	VDAG_07504	RNA polymerase II transcription factor B subunit 4. (398 aa)
	VDAG_07639	Replication factor C subunit 3. (393 aa)
	VDAG_07801	Metallothionein-I transcription activator. (81 aa)
	VDAG_08425	DNA-directed RNA polymerase II. (151 aa)
	VDAG_08469	Replication factor C subunit 4. (361 aa)
	VDAG_08535	Ubiquitin carboxyl-terminal hydrolase; Belongs to the peptidase C19 family. (1178 aa)
	VDAG_08641	TPR domain-containing protein. (513 aa)
	VDAG_08649	Uncharacterized protein. (489 aa)
	VDAG_08650	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism. (617 aa)
	VDAG_08811	RPOL4c domain-containing protein. (160 aa)
	VDAG_09169	Uncharacterized protein. (289 aa)
	VDAG_08924	Peptidyl-prolyl cis-trans isomerase E. (153 aa)
	VDAG_09246	Uncharacterized protein. (109 aa)
	VDAG_09598	AAA domain-containing protein. (1197 aa)
	VDAG_09663	Cell cycle control protein cwf8. (483 aa)
	VDAG_10019	RNA polymerase II transcription factor B subunit 1. (547 aa)
	VDAG_10031	DNA repair helicase RAD3. (772 aa)
	VDAG_10082	Uncharacterized protein. (412 aa)
	VDAG_10083	Mating-type switching protein swi10. (408 aa)
	VDAG_10136	Uncharacterized protein. (415 aa)
	VDAG_10269	Replication factor-A protein. (294 aa)
	VDAG_10383	Uncharacterized protein. (236 aa)
	VDAG_10288	COP9 signalosome complex subunit 5. (373 aa)
	VDAG_10309	DNA repair and recombination protein RAD26. (1116 aa)
	VDAG_10422	Pre-mRNA-splicing factor SYF1. (822 aa)
	VDAG_10430	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (152 aa)
	VDAG_10455	Cyclin mcs2. (359 aa)
	VDAG_10492	40S ribosomal protein S27a. (153 aa)

Your Current Organism:

Verticillium dahliae

NCBI taxonomy Id: 498257
Other names: V. dahliae VdLs.17, Verticillium dahliae VdLs.17

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDAG_00095	VDAG_02645	G2WRB2	G2WYG3	41 kDa peptidyl-prolyl cis-trans isomerase.	Pre-mRNA-splicing factor ISY1.	0.698
VDAG_00095	VDAG_06654	G2WRB2	G2X922	41 kDa peptidyl-prolyl cis-trans isomerase.	Intron-binding protein aquarius.	0.538
VDAG_00095	VDAG_09663	G2WRB2	G2XI13	41 kDa peptidyl-prolyl cis-trans isomerase.	Cell cycle control protein cwf8.	0.806
VDAG_00095	VDAG_10422	G2WRB2	G2XJU0	41 kDa peptidyl-prolyl cis-trans isomerase.	Pre-mRNA-splicing factor SYF1.	0.797
VDAG_00141	VDAG_00156	G2WRF8	G2WRH3	RNA polymerase II transcription factor B subunit 5.	DNA excision repair protein ERCC-6.	0.551
VDAG_00141	VDAG_00550	G2WRF8	G2WQA8	RNA polymerase II transcription factor B subunit 5.	COP9 signalosome complex subunit 6.	0.546
VDAG_00141	VDAG_00690	G2WRF8	G2WQP8	RNA polymerase II transcription factor B subunit 5.	DNA-directed RNA polymerases I.	0.797
VDAG_00141	VDAG_00787	G2WRF8	G2WR06	RNA polymerase II transcription factor B subunit 5.	CPSF_A domain-containing protein.	0.618
VDAG_00141	VDAG_00994	G2WRF8	G2WT71	RNA polymerase II transcription factor B subunit 5.	DNA-directed RNA polymerases I/II/III subunit 10.	0.811
VDAG_00141	VDAG_03186	G2WRF8	G2WYU4	RNA polymerase II transcription factor B subunit 5.	Uncharacterized protein.	0.732
VDAG_00141	VDAG_03750	G2WRF8	G2X0H1	RNA polymerase II transcription factor B subunit 5.	DNA repair helicase RAD25.	0.995
VDAG_00141	VDAG_03923	G2WRF8	G2X0Z4	RNA polymerase II transcription factor B subunit 5.	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	0.993
VDAG_00141	VDAG_04392	G2WRF8	G2X268	RNA polymerase II transcription factor B subunit 5.	DNA-directed RNA polymerase II subunit RPB7.	0.785
VDAG_00141	VDAG_05625	G2WRF8	G2X5X0	RNA polymerase II transcription factor B subunit 5.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.797
VDAG_00141	VDAG_06114	G2WRF8	G2X8H3	RNA polymerase II transcription factor B subunit 5.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.791
VDAG_00141	VDAG_06451	G2WRF8	G2X7J3	RNA polymerase II transcription factor B subunit 5.	DNA-directed RNA polymerases I.	0.797
VDAG_00141	VDAG_06842	G2WRF8	G2X9L0	RNA polymerase II transcription factor B subunit 5.	RNA polymerase II transcription factor B subunit 3.	0.952
VDAG_00141	VDAG_07068	G2WRF8	G2XAG5	RNA polymerase II transcription factor B subunit 5.	DNA-directed RNA polymerase II subunit RPB3.	0.797
VDAG_00141	VDAG_07098	G2WRF8	G2XAJ5	RNA polymerase II transcription factor B subunit 5.	DNA repair protein RAD14.	0.612
VDAG_00141	VDAG_07377	G2WRF8	G2XAZ8	RNA polymerase II transcription factor B subunit 5.	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.999