(111 nodes) GTP hydrolysis and joining of the 60S ribosomal subunit network (Verticillium dahliae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDAG_05789	60S ribosomal protein L39. (51 aa)
	VDAG_05786	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family. (217 aa)
	VDAG_02496	Uncharacterized protein. (404 aa)
	VDAG_05756	40S ribosomal protein S18; Belongs to the universal ribosomal protein uS13 family. (156 aa)
	VDAG_02507	60S ribosomal protein L14-B. (147 aa)
	VDAG_02518	60S ribosomal protein L24. (160 aa)
	VDAG_02543	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family. (262 aa)
	VDAG_02602	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family. (136 aa)
	VDAG_02683	Cytochrome c oxidase-assembly factor COX16. (113 aa)
	VDAG_03129	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family. (106 aa)
	VDAG_03283	60S acidic ribosomal protein P2; Belongs to the eukaryotic ribosomal protein P1/P2 family. (110 aa)
	VDAG_03315	40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family. (153 aa)
	VDAG_03062	40S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family. (151 aa)
	VDAG_03716	Aldehyde reductase. (300 aa)
	VDAG_03918	60S ribosomal protein L27-A. (135 aa)
	VDAG_03591	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (201 aa)
	VDAG_04294	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (312 aa)
	VDAG_02495	Uncharacterized protein. (280 aa)
	VDAG_02494	Ribosomal protein L37; Binds to the 23S rRNA. (97 aa)
	VDAG_02475	Reductase. (353 aa)
	VDAG_02441	60S ribosomal protein L21-B. (160 aa)
	VDAG_02440	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family. (191 aa)
	VDAG_02030	Ketoreductase. (347 aa)
	VDAG_10491	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (121 aa)
	VDAG_10447	40S ribosomal protein S17. (148 aa)
	VDAG_10446	Uncharacterized protein. (476 aa)
	VDAG_10311	60S ribosomal protein L7. (262 aa)
	VDAG_10310	40S ribosomal protein S14; Belongs to the universal ribosomal protein uS11 family. (151 aa)
	VDAG_10348	60S ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family. (172 aa)
	VDAG_10242	Uncharacterized protein. (873 aa)
	VDAG_10238	Uncharacterized protein. (455 aa)
	VDAG_10228	60S ribosomal protein L43. (92 aa)
	VDAG_10226	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family. (148 aa)
	VDAG_10225	40S ribosomal protein S22; Belongs to the universal ribosomal protein uS8 family. (130 aa)
	VDAG_09979	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL38 family. (80 aa)
	VDAG_09948	40S ribosomal protein S20. (116 aa)
	VDAG_09860	Uncharacterized protein. (444 aa)
	VDAG_09576	Uncharacterized protein. (151 aa)
	VDAG_09722	Mitochondrial 54S ribosomal protein L38; Belongs to the universal ribosomal protein uL14 family. (128 aa)
	VDAG_09547	60S ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family. (149 aa)
	VDAG_08928	40S ribosomal protein S10-A. (167 aa)
	VDAG_08793	60S ribosomal protein L9. (193 aa)
	VDAG_08578	60S ribosomal protein L30. (110 aa)
	VDAG_08577	60S ribosomal protein L10-B. (222 aa)
	RPS1	40S ribosomal protein S1; Belongs to the eukaryotic ribosomal protein eS1 family. (256 aa)
	VDAG_08113	3-beta hydroxysteroid dehydrogenase/isomerase family protein. (521 aa)
	VDAG_08099	NADPH-dependent methylglyoxal reductase GRE2. (331 aa)
	VDAG_07767	Dihydroflavonol-4-reductase. (353 aa)
	VDAG_07533	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (93 aa)
	VDAG_07532	40S ribosomal protein S5-B; Belongs to the universal ribosomal protein uS7 family. (212 aa)
	VDAG_07518	Uncharacterized protein. (479 aa)
	VDAG_07517	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (207 aa)
	VDAG_07261	Uncharacterized protein. (399 aa)
	VDAG_07204	60S ribosomal protein L16; Belongs to the universal ribosomal protein uL13 family. (202 aa)
	VDAG_07466	60S ribosomal protein L8. (261 aa)
	RPS0	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. (288 aa)
	VDAG_07051	60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family. (391 aa)
	VDAG_06906	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family. (240 aa)
	VDAG_07175	NAD dependent epimerase/dehydratase family protein. (350 aa)
	VDAG_06768	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family. (203 aa)
	VDAG_06690	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (193 aa)
	VDAG_01978	60S ribosomal protein L26-1. (136 aa)
	VDAG_01733	40S ribosomal protein S27. (82 aa)
	VDAG_01687	Rhamnogalacturonan acetylesterase. (238 aa)
	VDAG_01508	60S ribosomal protein L5. (299 aa)
	VDAG_01457	Uncharacterized protein. (56 aa)
	VDAG_01425	Aldehyde reductase. (340 aa)
	VDAG_01416	Mitochondrial 37S ribosomal protein SWS2; Belongs to the universal ribosomal protein uS13 family. (119 aa)
	VDAG_01336	60S ribosomal protein L4-B. (352 aa)
	VDAG_01335	Uncharacterized protein. (910 aa)
	VDAG_01223	40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family. (141 aa)
	VDAG_01126	D-lactaldehyde dehydrogenase. (372 aa)
	VDAG_01114	Mitochondrial 37S ribosomal protein S8. (162 aa)
	VDAG_01079	60S ribosomal protein L20. (209 aa)
	VDAG_01035	Uncharacterized protein. (303 aa)
	VDAG_01034	40S ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family. (160 aa)
	VDAG_00978	60S ribosomal protein L31. (123 aa)
	VDAG_01568	Methyltransf_33 domain-containing protein. (358 aa)
	VDAG_00416	Uncharacterized protein. (68 aa)
	VDAG_00372	Eukaryotic translation initiation factor 5B. (1037 aa)
	VDAG_00234	60S acidic ribosomal protein P1; Belongs to the eukaryotic ribosomal protein P1/P2 family. (109 aa)
	VDAG_00178	60S ribosomal protein L22. (126 aa)
	VDAG_00058	40S ribosomal protein S19. (152 aa)
	VDAG_00049	60S ribosomal protein L44; Belongs to the eukaryotic ribosomal protein eL42 family. (106 aa)
	VDAG_00048	Uncharacterized protein. (321 aa)
	VDAG_00737	S4 RNA-binding domain-containing protein. (515 aa)
	VDAG_04358	60S ribosomal protein L35. (125 aa)
	VDAG_04364	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family. (202 aa)
	VDAG_04489	60S ribosomal protein L33-B. (109 aa)
	VDAG_04560	60S ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family. (165 aa)
	VDAG_04563	Uncharacterized protein. (541 aa)
	VDAG_04564	Uncharacterized protein. (287 aa)
	VDAG_04596	40S ribosomal protein S28. (68 aa)
	VDAG_04609	60S ribosomal protein L17; Belongs to the universal ribosomal protein uL22 family. (185 aa)
	VDAG_04631	Uncharacterized protein. (535 aa)
	VDAG_04766	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family. (251 aa)
	VDAG_05277	Uncharacterized protein. (779 aa)
	VDAG_05472	Uncharacterized protein. (394 aa)
	VDAG_05663	60S ribosomal protein L34-B. (148 aa)
	VDAG_05679	40S ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family. (143 aa)
	VDAG_05698	60S ribosomal protein L32. (131 aa)
	VDAG_06682	60S ribosomal protein L18. (183 aa)
	VDAG_06608	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family. (63 aa)
	VDAG_06045	40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family. (261 aa)
	VDAG_06273	60S ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family. (139 aa)
	VDAG_06378	40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family. (262 aa)
	VDAG_06316	60S ribosomal protein L28. (158 aa)
	VDAG_06306	60S ribosomal protein L23a. (157 aa)
	VDAG_05940	60S ribosomal protein L2. (254 aa)
	VDAG_05864	Uncharacterized protein. (211 aa)
	VDAG_05835	Aldehyde reductase. (343 aa)

Your Current Organism:

Verticillium dahliae

NCBI taxonomy Id: 498257
Other names: V. dahliae VdLs.17, Verticillium dahliae VdLs.17

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RPS0	RPS1	G2XAI6	G2XDR2	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	40S ribosomal protein S1; Belongs to the eukaryotic ribosomal protein eS1 family.	0.999
RPS0	VDAG_00048	G2XAI6	G2WR65	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	Uncharacterized protein.	0.848
RPS0	VDAG_00049	G2XAI6	G2WR66	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	60S ribosomal protein L44; Belongs to the eukaryotic ribosomal protein eL42 family.	0.928
RPS0	VDAG_00058	G2XAI6	G2WR75	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	40S ribosomal protein S19.	0.999
RPS0	VDAG_00178	G2XAI6	G2WRJ5	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	60S ribosomal protein L22.	0.998
RPS0	VDAG_00234	G2XAI6	G2WRQ1	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	60S acidic ribosomal protein P1; Belongs to the eukaryotic ribosomal protein P1/P2 family.	0.998
RPS0	VDAG_00372	G2XAI6	G2WS39	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	Eukaryotic translation initiation factor 5B.	0.960
RPS0	VDAG_00416	G2XAI6	G2WS83	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	Uncharacterized protein.	0.991
RPS0	VDAG_00737	G2XAI6	G2WQU5	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	S4 RNA-binding domain-containing protein.	0.991
RPS0	VDAG_00978	G2XAI6	G2WT55	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	60S ribosomal protein L31.	0.999
RPS0	VDAG_01034	G2XAI6	G2WTB1	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	40S ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family.	0.990
RPS0	VDAG_01035	G2XAI6	G2WTB2	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	Uncharacterized protein.	0.989
RPS0	VDAG_01079	G2XAI6	G2WTF6	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	60S ribosomal protein L20.	0.999
RPS0	VDAG_01114	G2XAI6	G2WTJ1	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	Mitochondrial 37S ribosomal protein S8.	0.986
RPS0	VDAG_01126	G2XAI6	G2WTK3	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	D-lactaldehyde dehydrogenase.	0.576
RPS0	VDAG_01223	G2XAI6	G2WTV0	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.	0.999
RPS0	VDAG_01335	G2XAI6	G2WU62	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	Uncharacterized protein.	0.982
RPS0	VDAG_01336	G2XAI6	G2WU63	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	60S ribosomal protein L4-B.	0.982
RPS0	VDAG_01416	G2XAI6	G2WUE3	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	Mitochondrial 37S ribosomal protein SWS2; Belongs to the universal ribosomal protein uS13 family.	0.989
RPS0	VDAG_01425	G2XAI6	G2WUF2	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	Aldehyde reductase.	0.576