30 items (Verticillium dahliae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDAG_06842	RNA polymerase II transcription factor B subunit 3. (353 aa)
	VDAG_00690	DNA-directed RNA polymerases I. (231 aa)
	VDAG_00696	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (122 aa)
	VDAG_00141	RNA polymerase II transcription factor B subunit 5. (71 aa)
	VDAG_00363	60S ribosomal protein L40. (299 aa)
	VDAG_00364	Ubiquitin. (137 aa)
	VDAG_01612	TATA-box-binding protein. (249 aa)
	VDAG_00994	DNA-directed RNA polymerases I/II/III subunit 10. (76 aa)
	VDAG_02339	HMG box-containing protein. (600 aa)
	VDAG_02595	DNA-dependent RNA polymerase I subunit A43. (486 aa)
	VDAG_03020	RNA polymerase I-specific transcription initiation factor rrn3. (693 aa)
	VDAG_03035	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1231 aa)
	VDAG_03750	DNA repair helicase RAD25. (792 aa)
	VDAG_03923	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (461 aa)
	VDAG_04242	DNA-directed RNA polymerases I and III subunit RPAC1. (375 aa)
	VDAG_06451	DNA-directed RNA polymerases I. (149 aa)
	VDAG_07377	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (476 aa)
	VDAG_07504	RNA polymerase II transcription factor B subunit 4. (398 aa)
	VDAG_07801	Metallothionein-I transcription activator. (81 aa)
	VDAG_08414	Uncharacterized protein. (325 aa)
	VDAG_08665	Chromo domain-containing protein. (1735 aa)
	VDAG_08966	SAP30_Sin3_bdg domain-containing protein. (180 aa)
	VDAG_09415	Histone H2B; Belongs to the histone H2B family. (137 aa)
	VDAG_09922	Myb domain-containing protein. (600 aa)
	VDAG_09923	Uncharacterized protein. (1110 aa)
	VDAG_10019	RNA polymerase II transcription factor B subunit 1. (547 aa)
	VDAG_10031	DNA repair helicase RAD3. (772 aa)
	VDAG_10033	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1702 aa)
	VDAG_10430	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (152 aa)
	VDAG_10455	Cyclin mcs2. (359 aa)

Your Current Organism:

Verticillium dahliae

NCBI taxonomy Id: 498257
Other names: V. dahliae VdLs.17, Verticillium dahliae VdLs.17

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDAG_00141	VDAG_00690	G2WRF8	G2WQP8	RNA polymerase II transcription factor B subunit 5.	DNA-directed RNA polymerases I.	0.797
VDAG_00141	VDAG_00696	G2WRF8	G2WQQ4	RNA polymerase II transcription factor B subunit 5.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.663
VDAG_00141	VDAG_00994	G2WRF8	G2WT71	RNA polymerase II transcription factor B subunit 5.	DNA-directed RNA polymerases I/II/III subunit 10.	0.811
VDAG_00141	VDAG_01612	G2WRF8	G2WSL6	RNA polymerase II transcription factor B subunit 5.	TATA-box-binding protein.	0.795
VDAG_00141	VDAG_03035	G2WRF8	G2X012	RNA polymerase II transcription factor B subunit 5.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.691
VDAG_00141	VDAG_03750	G2WRF8	G2X0H1	RNA polymerase II transcription factor B subunit 5.	DNA repair helicase RAD25.	0.995
VDAG_00141	VDAG_03923	G2WRF8	G2X0Z4	RNA polymerase II transcription factor B subunit 5.	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	0.993
VDAG_00141	VDAG_04242	G2WRF8	G2X1R8	RNA polymerase II transcription factor B subunit 5.	DNA-directed RNA polymerases I and III subunit RPAC1.	0.712
VDAG_00141	VDAG_06451	G2WRF8	G2X7J3	RNA polymerase II transcription factor B subunit 5.	DNA-directed RNA polymerases I.	0.797
VDAG_00141	VDAG_06842	G2WRF8	G2X9L0	RNA polymerase II transcription factor B subunit 5.	RNA polymerase II transcription factor B subunit 3.	0.952
VDAG_00141	VDAG_07377	G2WRF8	G2XAZ8	RNA polymerase II transcription factor B subunit 5.	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.999
VDAG_00141	VDAG_07504	G2WRF8	G2XBH2	RNA polymerase II transcription factor B subunit 5.	RNA polymerase II transcription factor B subunit 4.	0.996
VDAG_00141	VDAG_07801	G2WRF8	G2XCB9	RNA polymerase II transcription factor B subunit 5.	Metallothionein-I transcription activator.	0.811
VDAG_00141	VDAG_08414	G2WRF8	G2XE32	RNA polymerase II transcription factor B subunit 5.	Uncharacterized protein.	0.738
VDAG_00141	VDAG_08966	G2WRF8	G2XFY7	RNA polymerase II transcription factor B subunit 5.	SAP30_Sin3_bdg domain-containing protein.	0.663
VDAG_00141	VDAG_10019	G2WRF8	G2XIN7	RNA polymerase II transcription factor B subunit 5.	RNA polymerase II transcription factor B subunit 1.	0.989
VDAG_00141	VDAG_10031	G2WRF8	G2XIP9	RNA polymerase II transcription factor B subunit 5.	DNA repair helicase RAD3.	0.989
VDAG_00141	VDAG_10430	G2WRF8	G2XJU8	RNA polymerase II transcription factor B subunit 5.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.881
VDAG_00141	VDAG_10455	G2WRF8	G2XJX3	RNA polymerase II transcription factor B subunit 5.	Cyclin mcs2.	0.737
VDAG_00363	VDAG_00364	G2WS30	G2WS31	60S ribosomal protein L40.	Ubiquitin.	0.846