41 items (Verticillium dahliae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDAG_00594	Uncharacterized protein. (302 aa)
	VDAG_00613	THO complex subunit 2. (2374 aa)
	VDAG_00074	Polyadenylate-binding protein. (205 aa)
	VDAG_00399	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (94 aa)
	VDAG_01132	Pre-mRNA-processing factor 17. (531 aa)
	VDAG_01885	Uncharacterized protein. (220 aa)
	VDAG_01886	Uncharacterized protein. (241 aa)
	VDAG_02007	LSM domain-containing protein. (79 aa)
	VDAG_02023	DUF866 domain-containing protein. (160 aa)
	VDAG_02725	RRM domain-containing protein. (309 aa)
	VDAG_02439	Pre-mRNA-splicing factor SLU7. (468 aa)
	VDAG_03173	Uncharacterized protein. (213 aa)
	VDAG_03244	Pre-mRNA-splicing factor ATP-dependent RNA helicase prp16. (963 aa)
	VDAG_03291	RRM domain-containing protein. (149 aa)
	VDAG_03004	PWI domain-containing protein. (397 aa)
	VDAG_03063	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (589 aa)
	VDAG_03949	Uncharacterized protein. (107 aa)
	VDAG_04254	RNA-binding protein. (306 aa)
	VDAG_04200	Splicing factor U2AF 23 kDa subunit. (210 aa)
	VDAG_04655	SAP domain-containing protein. (279 aa)
	VDAG_04682	Uncharacterized protein. (378 aa)
	VDAG_04724	Uncharacterized protein. (729 aa)
	VDAG_05067	Uncharacterized protein. (304 aa)
	VDAG_05766	Cleavage and polyadenylation specificity factor subunit 5. (268 aa)
	VDAG_05919	Pre-mRNA-splicing factor SPP2. (403 aa)
	VDAG_06186	Small nuclear ribonucleoprotein G. (85 aa)
	VDAG_06621	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (604 aa)
	VDAG_06655	THO complex subunit 1. (858 aa)
	VDAG_06770	CID domain-containing protein. (499 aa)
	VDAG_07628	RNA-binding post-transcriptional regulator cip2. (601 aa)
	CLP1	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation. (459 aa)
	VDAG_08160	Pre-mRNA polyadenylation factor FIP1. (343 aa)
	VDAG_08683	GTP-binding protein EsdC. (326 aa)
	VDAG_08700	Uncharacterized protein. (357 aa)
	VDAG_08833	THO complex subunit 3. (339 aa)
	VDAG_09052	Uncharacterized protein. (187 aa)
	VDAG_09053	Uncharacterized protein. (239 aa)
	VDAG_09478	Uncharacterized protein. (263 aa)
	VDAG_09513	Zn(2)-C6 fungal-type domain-containing protein. (879 aa)
	VDAG_09844	mRNA 3'-end-processing protein RNA14. (990 aa)
	VDAG_10099	Pre-mRNA splicing factor. (322 aa)

Your Current Organism:

Verticillium dahliae

NCBI taxonomy Id: 498257
Other names: V. dahliae VdLs.17, Verticillium dahliae VdLs.17

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CLP1	VDAG_00074	G2XCV7	G2WR91	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	Polyadenylate-binding protein.	0.649
CLP1	VDAG_00613	G2XCV7	G2WQH1	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	THO complex subunit 2.	0.636
CLP1	VDAG_02725	G2XCV7	G2WWU6	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	RRM domain-containing protein.	0.704
CLP1	VDAG_03173	G2XCV7	G2WYT1	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	Uncharacterized protein.	0.668
CLP1	VDAG_03244	G2XCV7	G2WZ02	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	Pre-mRNA-splicing factor ATP-dependent RNA helicase prp16.	0.643
CLP1	VDAG_03291	G2XCV7	G2WZ49	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	RRM domain-containing protein.	0.818
CLP1	VDAG_03949	G2XCV7	G2X120	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	Uncharacterized protein.	0.614
CLP1	VDAG_04254	G2XCV7	G2X1T0	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	RNA-binding protein.	0.993
CLP1	VDAG_04655	G2XCV7	G2X3R8	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	SAP domain-containing protein.	0.614
CLP1	VDAG_04724	G2XCV7	G2X3Y7	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	Uncharacterized protein.	0.585
CLP1	VDAG_05766	G2XCV7	G2X6I4	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	Cleavage and polyadenylation specificity factor subunit 5.	0.825
CLP1	VDAG_06621	G2XCV7	G2X8Y9	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	0.786
CLP1	VDAG_06770	G2XCV7	G2X9D8	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	CID domain-containing protein.	0.999
CLP1	VDAG_07628	G2XCV7	G2XBU6	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	RNA-binding post-transcriptional regulator cip2.	0.818
CLP1	VDAG_08160	G2XCV7	G2XDC8	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	Pre-mRNA polyadenylation factor FIP1.	0.931
CLP1	VDAG_08700	G2XCV7	G2XEW8	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	Uncharacterized protein.	0.661
CLP1	VDAG_08833	G2XCV7	G2XFA1	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	THO complex subunit 3.	0.661
CLP1	VDAG_09052	G2XCV7	G2XG73	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	Uncharacterized protein.	0.679
CLP1	VDAG_09053	G2XCV7	G2XG74	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	Uncharacterized protein.	0.679
CLP1	VDAG_09478	G2XCV7	G2XH46	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	Uncharacterized protein.	0.581