24 items (Verticillium dahliae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDAG_09769	SANT domain-containing protein. (600 aa)
	VDAG_00690	DNA-directed RNA polymerases I. (231 aa)
	VDAG_00224	DNA-3-methyladenine glycosylase. (405 aa)
	VDAG_01612	TATA-box-binding protein. (249 aa)
	VDAG_00994	DNA-directed RNA polymerases I/II/III subunit 10. (76 aa)
	VDAG_01278	Transcription factor tau subunit sfc1. (758 aa)
	VDAG_10430	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (152 aa)
	VDAG_01908	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (110 aa)
	VDAG_03280	DNA-directed RNA polymerase III subunit 22.9 kDa polypeptide. (174 aa)
	VDAG_03448	Uncharacterized protein. (753 aa)
	VDAG_04053	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (666 aa)
	VDAG_04242	DNA-directed RNA polymerases I and III subunit RPAC1. (375 aa)
	VDAG_06285	Uncharacterized protein. (971 aa)
	VDAG_06451	DNA-directed RNA polymerases I. (149 aa)
	VDAG_06260	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family. (393 aa)
	VDAG_06676	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1456 aa)
	VDAG_06975	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1160 aa)
	VDAG_07792	Transcription factor tfiiib complex subunit brf1. (735 aa)
	VDAG_07801	Metallothionein-I transcription activator. (81 aa)
	VDAG_08162	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs. (283 aa)
	VDAG_08310	B-block_TFIIIC domain-containing protein. (1974 aa)
	VDAG_09904	Uncharacterized protein. (406 aa)
	VDAG_08414	Uncharacterized protein. (325 aa)
	VDAG_08877	RPOL4c domain-containing protein. (149 aa)

Your Current Organism:

Verticillium dahliae

NCBI taxonomy Id: 498257
Other names: V. dahliae VdLs.17, Verticillium dahliae VdLs.17

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDAG_00690	VDAG_00994	G2WQP8	G2WT71	DNA-directed RNA polymerases I.	DNA-directed RNA polymerases I/II/III subunit 10.	0.999
VDAG_00690	VDAG_01612	G2WQP8	G2WSL6	DNA-directed RNA polymerases I.	TATA-box-binding protein.	0.983
VDAG_00690	VDAG_01908	G2WQP8	G2WWC2	DNA-directed RNA polymerases I.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.999
VDAG_00690	VDAG_03280	G2WQP8	G2WZ38	DNA-directed RNA polymerases I.	DNA-directed RNA polymerase III subunit 22.9 kDa polypeptide.	0.999
VDAG_00690	VDAG_04053	G2WQP8	G2X1C4	DNA-directed RNA polymerases I.	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
VDAG_00690	VDAG_04242	G2WQP8	G2X1R8	DNA-directed RNA polymerases I.	DNA-directed RNA polymerases I and III subunit RPAC1.	0.999
VDAG_00690	VDAG_06260	G2WQP8	G2X7Z3	DNA-directed RNA polymerases I.	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.	0.999
VDAG_00690	VDAG_06285	G2WQP8	G2X727	DNA-directed RNA polymerases I.	Uncharacterized protein.	0.737
VDAG_00690	VDAG_06451	G2WQP8	G2X7J3	DNA-directed RNA polymerases I.	DNA-directed RNA polymerases I.	0.999
VDAG_00690	VDAG_06676	G2WQP8	G2X944	DNA-directed RNA polymerases I.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
VDAG_00690	VDAG_06975	G2WQP8	G2XA72	DNA-directed RNA polymerases I.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
VDAG_00690	VDAG_07792	G2WQP8	G2XCB0	DNA-directed RNA polymerases I.	Transcription factor tfiiib complex subunit brf1.	0.875
VDAG_00690	VDAG_07801	G2WQP8	G2XCB9	DNA-directed RNA polymerases I.	Metallothionein-I transcription activator.	0.999
VDAG_00690	VDAG_08162	G2WQP8	G2XDD0	DNA-directed RNA polymerases I.	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs.	0.999
VDAG_00690	VDAG_08414	G2WQP8	G2XE32	DNA-directed RNA polymerases I.	Uncharacterized protein.	0.951
VDAG_00690	VDAG_08877	G2WQP8	G2XG90	DNA-directed RNA polymerases I.	RPOL4c domain-containing protein.	0.999
VDAG_00690	VDAG_09769	G2WQP8	G2XHL5	DNA-directed RNA polymerases I.	SANT domain-containing protein.	0.875
VDAG_00690	VDAG_09904	G2WQP8	G2XIC2	DNA-directed RNA polymerases I.	Uncharacterized protein.	0.998
VDAG_00690	VDAG_10430	G2WQP8	G2XJU8	DNA-directed RNA polymerases I.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.999
VDAG_00994	VDAG_00690	G2WT71	G2WQP8	DNA-directed RNA polymerases I/II/III subunit 10.	DNA-directed RNA polymerases I.	0.999