42 items (Verticillium dahliae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDAG_03014	Transcription initiation factor iif. (368 aa)
	VDAG_03750	DNA repair helicase RAD25. (792 aa)
	VDAG_03923	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (461 aa)
	VDAG_04392	DNA-directed RNA polymerase II subunit RPB7. (171 aa)
	VDAG_04819	GCR1_C domain-containing protein. (689 aa)
	VDAG_05625	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1260 aa)
	VDAG_05874	Nuclear cap-binding protein subunit 2. (186 aa)
	VDAG_05954	Tetratricopeptide repeat protein. (1150 aa)
	VDAG_06451	DNA-directed RNA polymerases I. (149 aa)
	VDAG_06270	Uncharacterized protein. (513 aa)
	VDAG_05959	Uncharacterized protein. (2993 aa)
	VDAG_06114	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1755 aa)
	VDAG_06842	RNA polymerase II transcription factor B subunit 3. (353 aa)
	VDAG_07068	DNA-directed RNA polymerase II subunit RPB3. (342 aa)
	VDAG_07377	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (476 aa)
	VDAG_07469	Uncharacterized protein. (561 aa)
	VDAG_07504	RNA polymerase II transcription factor B subunit 4. (398 aa)
	VDAG_07801	Metallothionein-I transcription activator. (81 aa)
	VDAG_08363	Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene. (112 aa)
	VDAG_08425	DNA-directed RNA polymerase II. (151 aa)
	VDAG_08432	Cap binding protein. (795 aa)
	VDAG_08627	Transcription elongation factor Spt6; Plays a role in maintenance of chromatin structure during RNA polymerase II transcription elongation thereby repressing transcription initiation from cryptic promoters. Mediates the reassembly of nucleosomes onto the promoters of at least a selected set of genes during repression; the nucleosome reassembly is essential for transcriptional repression; Belongs to the SPT6 family. (1412 aa)
	VDAG_08694	Uncharacterized protein. (410 aa)
	VDAG_08807	TPR domain-containing protein. (379 aa)
	VDAG_08811	RPOL4c domain-containing protein. (160 aa)
	VDAG_09042	Uncharacterized protein. (590 aa)
	VDAG_09544	RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II. (818 aa)
	VDAG_10019	RNA polymerase II transcription factor B subunit 1. (547 aa)
	VDAG_10031	DNA repair helicase RAD3. (772 aa)
	VDAG_10130	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (722 aa)
	VDAG_10223	Uncharacterized protein. (491 aa)
	VDAG_10430	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (152 aa)
	VDAG_10455	Cyclin mcs2. (359 aa)
	VDAG_00994	DNA-directed RNA polymerases I/II/III subunit 10. (76 aa)
	VDAG_01211	Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene. (1062 aa)
	VDAG_01670	Transcription factor IWS1. (426 aa)
	VDAG_01824	RNA polymerase-associated protein RTF1. (610 aa)
	VDAG_02393	GCR1_C domain-containing protein. (300 aa)
	VDAG_03186	Uncharacterized protein. (577 aa)
	VDAG_00682	Cell division control protein. (411 aa)
	VDAG_00690	DNA-directed RNA polymerases I. (231 aa)
	VDAG_00141	RNA polymerase II transcription factor B subunit 5. (71 aa)

Your Current Organism:

Verticillium dahliae

NCBI taxonomy Id: 498257
Other names: V. dahliae VdLs.17, Verticillium dahliae VdLs.17

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDAG_00141	VDAG_00690	G2WRF8	G2WQP8	RNA polymerase II transcription factor B subunit 5.	DNA-directed RNA polymerases I.	0.797
VDAG_00141	VDAG_00994	G2WRF8	G2WT71	RNA polymerase II transcription factor B subunit 5.	DNA-directed RNA polymerases I/II/III subunit 10.	0.811
VDAG_00141	VDAG_03014	G2WRF8	G2WZZ1	RNA polymerase II transcription factor B subunit 5.	Transcription initiation factor iif.	0.797
VDAG_00141	VDAG_03186	G2WRF8	G2WYU4	RNA polymerase II transcription factor B subunit 5.	Uncharacterized protein.	0.732
VDAG_00141	VDAG_03750	G2WRF8	G2X0H1	RNA polymerase II transcription factor B subunit 5.	DNA repair helicase RAD25.	0.995
VDAG_00141	VDAG_03923	G2WRF8	G2X0Z4	RNA polymerase II transcription factor B subunit 5.	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	0.993
VDAG_00141	VDAG_04392	G2WRF8	G2X268	RNA polymerase II transcription factor B subunit 5.	DNA-directed RNA polymerase II subunit RPB7.	0.785
VDAG_00141	VDAG_05625	G2WRF8	G2X5X0	RNA polymerase II transcription factor B subunit 5.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.797
VDAG_00141	VDAG_06114	G2WRF8	G2X8H3	RNA polymerase II transcription factor B subunit 5.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.791
VDAG_00141	VDAG_06451	G2WRF8	G2X7J3	RNA polymerase II transcription factor B subunit 5.	DNA-directed RNA polymerases I.	0.797
VDAG_00141	VDAG_06842	G2WRF8	G2X9L0	RNA polymerase II transcription factor B subunit 5.	RNA polymerase II transcription factor B subunit 3.	0.952
VDAG_00141	VDAG_07068	G2WRF8	G2XAG5	RNA polymerase II transcription factor B subunit 5.	DNA-directed RNA polymerase II subunit RPB3.	0.797
VDAG_00141	VDAG_07377	G2WRF8	G2XAZ8	RNA polymerase II transcription factor B subunit 5.	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.999
VDAG_00141	VDAG_07504	G2WRF8	G2XBH2	RNA polymerase II transcription factor B subunit 5.	RNA polymerase II transcription factor B subunit 4.	0.996
VDAG_00141	VDAG_07801	G2WRF8	G2XCB9	RNA polymerase II transcription factor B subunit 5.	Metallothionein-I transcription activator.	0.811
VDAG_00141	VDAG_08425	G2WRF8	G2XE43	RNA polymerase II transcription factor B subunit 5.	DNA-directed RNA polymerase II.	0.797
VDAG_00141	VDAG_08811	G2WRF8	G2XF79	RNA polymerase II transcription factor B subunit 5.	RPOL4c domain-containing protein.	0.796
VDAG_00141	VDAG_10019	G2WRF8	G2XIN7	RNA polymerase II transcription factor B subunit 5.	RNA polymerase II transcription factor B subunit 1.	0.989
VDAG_00141	VDAG_10031	G2WRF8	G2XIP9	RNA polymerase II transcription factor B subunit 5.	DNA repair helicase RAD3.	0.989
VDAG_00141	VDAG_10130	G2WRF8	G2XIZ8	RNA polymerase II transcription factor B subunit 5.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.797