43 items (Verticillium dahliae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDAG_03186	Uncharacterized protein. (577 aa)
	VDAG_06875	Transcription initiation factor TFIID subunit 9. (312 aa)
	VDAG_06842	RNA polymerase II transcription factor B subunit 3. (353 aa)
	VDAG_06114	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1755 aa)
	VDAG_06076	Uncharacterized protein. (412 aa)
	VDAG_06451	DNA-directed RNA polymerases I. (149 aa)
	VDAG_05625	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1260 aa)
	VDAG_05018	TAFII28 domain-containing protein. (327 aa)
	VDAG_04649	Transcription initiation factor TFIID subunit 5. (759 aa)
	VDAG_04574	Transcription initiation factor IIE subunit alpha. (411 aa)
	VDAG_04392	DNA-directed RNA polymerase II subunit RPB7. (171 aa)
	VDAG_04383	Transcription initiation factor TFIID subunit 7. (506 aa)
	VDAG_03923	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (461 aa)
	VDAG_03750	DNA repair helicase RAD25. (792 aa)
	VDAG_03014	Transcription initiation factor iif. (368 aa)
	VDAG_03521	Transcription initiation factor IIB. (352 aa)
	VDAG_01224	Uncharacterized protein. (356 aa)
	VDAG_01058	Transcription initiation factor TFIID 127kD subunit. (1533 aa)
	VDAG_00994	DNA-directed RNA polymerases I/II/III subunit 10. (76 aa)
	VDAG_00940	Transcription initiation factor TFIID subunit 1. (1158 aa)
	VDAG_00839	Transcription initiation factor TFIID subunit 12. (751 aa)
	VDAG_01612	TATA-box-binding protein. (249 aa)
	VDAG_01571	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (277 aa)
	VDAG_00385	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (115 aa)
	VDAG_00141	RNA polymerase II transcription factor B subunit 5. (71 aa)
	VDAG_00690	DNA-directed RNA polymerases I. (231 aa)
	VDAG_07095	Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...] (224 aa)
	VDAG_07377	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (476 aa)
	VDAG_07504	RNA polymerase II transcription factor B subunit 4. (398 aa)
	VDAG_07801	Metallothionein-I transcription activator. (81 aa)
	VDAG_08414	Uncharacterized protein. (325 aa)
	VDAG_08425	DNA-directed RNA polymerase II. (151 aa)
	VDAG_08575	Acyl_transf_3 domain-containing protein. (517 aa)
	VDAG_08811	RPOL4c domain-containing protein. (160 aa)
	VDAG_09315	Transcription initiation factor TFIID subunit 6. (394 aa)
	VDAG_10019	RNA polymerase II transcription factor B subunit 1. (547 aa)
	VDAG_10031	DNA repair helicase RAD3. (772 aa)
	VDAG_10130	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (722 aa)
	VDAG_10182	Uncharacterized protein. (275 aa)
	VDAG_10430	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (152 aa)
	VDAG_10455	Cyclin mcs2. (359 aa)
	VDAG_07068	DNA-directed RNA polymerase II subunit RPB3. (342 aa)
	VDAG_07004	Uncharacterized protein. (167 aa)

Your Current Organism:

Verticillium dahliae

NCBI taxonomy Id: 498257
Other names: V. dahliae VdLs.17, Verticillium dahliae VdLs.17

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDAG_00141	VDAG_00385	G2WRF8	G2WS52	RNA polymerase II transcription factor B subunit 5.	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.	0.781
VDAG_00141	VDAG_00690	G2WRF8	G2WQP8	RNA polymerase II transcription factor B subunit 5.	DNA-directed RNA polymerases I.	0.797
VDAG_00141	VDAG_00994	G2WRF8	G2WT71	RNA polymerase II transcription factor B subunit 5.	DNA-directed RNA polymerases I/II/III subunit 10.	0.811
VDAG_00141	VDAG_01571	G2WRF8	G2WSG8	RNA polymerase II transcription factor B subunit 5.	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.	0.990
VDAG_00141	VDAG_01612	G2WRF8	G2WSL6	RNA polymerase II transcription factor B subunit 5.	TATA-box-binding protein.	0.795
VDAG_00141	VDAG_03014	G2WRF8	G2WZZ1	RNA polymerase II transcription factor B subunit 5.	Transcription initiation factor iif.	0.797
VDAG_00141	VDAG_03186	G2WRF8	G2WYU4	RNA polymerase II transcription factor B subunit 5.	Uncharacterized protein.	0.732
VDAG_00141	VDAG_03521	G2WRF8	G2WZS9	RNA polymerase II transcription factor B subunit 5.	Transcription initiation factor IIB.	0.881
VDAG_00141	VDAG_03750	G2WRF8	G2X0H1	RNA polymerase II transcription factor B subunit 5.	DNA repair helicase RAD25.	0.995
VDAG_00141	VDAG_03923	G2WRF8	G2X0Z4	RNA polymerase II transcription factor B subunit 5.	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	0.993
VDAG_00141	VDAG_04392	G2WRF8	G2X268	RNA polymerase II transcription factor B subunit 5.	DNA-directed RNA polymerase II subunit RPB7.	0.785
VDAG_00141	VDAG_04574	G2WRF8	G2X3I7	RNA polymerase II transcription factor B subunit 5.	Transcription initiation factor IIE subunit alpha.	0.990
VDAG_00141	VDAG_05625	G2WRF8	G2X5X0	RNA polymerase II transcription factor B subunit 5.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.797
VDAG_00141	VDAG_06076	G2WRF8	G2X8D5	RNA polymerase II transcription factor B subunit 5.	Uncharacterized protein.	0.797
VDAG_00141	VDAG_06114	G2WRF8	G2X8H3	RNA polymerase II transcription factor B subunit 5.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.791
VDAG_00141	VDAG_06451	G2WRF8	G2X7J3	RNA polymerase II transcription factor B subunit 5.	DNA-directed RNA polymerases I.	0.797
VDAG_00141	VDAG_06842	G2WRF8	G2X9L0	RNA polymerase II transcription factor B subunit 5.	RNA polymerase II transcription factor B subunit 3.	0.952
VDAG_00141	VDAG_07068	G2WRF8	G2XAG5	RNA polymerase II transcription factor B subunit 5.	DNA-directed RNA polymerase II subunit RPB3.	0.797
VDAG_00141	VDAG_07377	G2WRF8	G2XAZ8	RNA polymerase II transcription factor B subunit 5.	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.999
VDAG_00141	VDAG_07504	G2WRF8	G2XBH2	RNA polymerase II transcription factor B subunit 5.	RNA polymerase II transcription factor B subunit 4.	0.996