STRINGSTRING
VDAG_03300 VDAG_03300 VDAG_04254 VDAG_04254 VDAG_09937 VDAG_09937 VDAG_09844 VDAG_09844 VDAG_09053 VDAG_09053 VDAG_09052 VDAG_09052 VDAG_08432 VDAG_08432 VDAG_08160 VDAG_08160 VDAG_05766 VDAG_05766 VDAG_05874 VDAG_05874 VDAG_06445 VDAG_06445 VDAG_06137 VDAG_06137 VDAG_06621 VDAG_06621 VDAG_06770 VDAG_06770 VDAG_06824 VDAG_06824 VDAG_06928 VDAG_06928 VDAG_07628 VDAG_07628 CLP1 CLP1 VDAG_00074 VDAG_00074 VDAG_03291 VDAG_03291
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
VDAG_03300DUF3453 domain-containing protein. (719 aa)
VDAG_04254RNA-binding protein. (306 aa)
VDAG_09937Cleavage and polyadenylation specificity factor subunit 2. (972 aa)
VDAG_09844mRNA 3'-end-processing protein RNA14. (990 aa)
VDAG_09053Uncharacterized protein. (239 aa)
VDAG_09052Uncharacterized protein. (187 aa)
VDAG_08432Cap binding protein. (795 aa)
VDAG_08160Pre-mRNA polyadenylation factor FIP1. (343 aa)
VDAG_05766Cleavage and polyadenylation specificity factor subunit 5. (268 aa)
VDAG_05874Nuclear cap-binding protein subunit 2. (186 aa)
VDAG_06445Polyadenylation factor subunit 2. (540 aa)
VDAG_06137Cft-1. (1445 aa)
VDAG_06621Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (604 aa)
VDAG_06770CID domain-containing protein. (499 aa)
VDAG_06824mRNA 3'-end-processing protein YTH1. (395 aa)
VDAG_06928Endoribonuclease YSH1. (837 aa)
VDAG_07628RNA-binding post-transcriptional regulator cip2. (601 aa)
CLP1mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation. (459 aa)
VDAG_00074Polyadenylate-binding protein. (205 aa)
VDAG_03291RRM domain-containing protein. (149 aa)
Your Current Organism:
Verticillium dahliae
NCBI taxonomy Id: 498257
Other names: V. dahliae VdLs.17, Verticillium dahliae VdLs.17
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