STRINGSTRING
VDAG_10400 VDAG_10400 VDAG_09844 VDAG_09844 VDAG_08828 VDAG_08828 VDAG_03123 VDAG_03123 VDAG_00012 VDAG_00012 VDAG_06693 VDAG_06693 VDAG_10422 VDAG_10422 VDAG_09952 VDAG_09952
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
VDAG_10400rRNA biogenesis protein RRP5. (1790 aa)
VDAG_09844mRNA 3'-end-processing protein RNA14. (990 aa)
VDAG_08828Pre-mRNA-splicing factor clf1. (673 aa)
VDAG_03123Pre-mRNA-processing factor 39. (576 aa)
VDAG_00012Pre-mRNA-splicing factor prp1. (718 aa)
VDAG_06693Uncharacterized protein. (1082 aa)
VDAG_10422Pre-mRNA-splicing factor SYF1. (822 aa)
VDAG_09952U3 snoRNP protein. (327 aa)
Your Current Organism:
Verticillium dahliae
NCBI taxonomy Id: 498257
Other names: V. dahliae VdLs.17, Verticillium dahliae VdLs.17
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